Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR670-201ENST00000390142 98 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RNA5SP181-201ENST00000410246 98 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC007064.1-201ENST00000412238 351 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RPL26P27-201ENST00000414397 437 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 BPY2DP-201ENST00000422208 265 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC005062.1-206ENST00000424516 710 ntTSL 3 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC104651.1-201ENST00000427559 735 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC092017.2-201ENST00000427600 362 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC092427.1-202ENST00000430569 476 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 MTATP6P17-201ENST00000431030 672 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 HMGB1P27-201ENST00000431429 603 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC098831.1-201ENST00000440661 216 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 NEFMP1-201ENST00000443423 1006 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 WASF1P1-201ENST00000447560 1131 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 MTATP6P7-201ENST00000453315 681 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RPL12P25-201ENST00000455592 494 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RNU6-953P-201ENST00000459154 107 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 FTH1P2-201ENST00000466086 412 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 MTND4LP3-201ENST00000468320 276 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 SRIP1-201ENST00000489235 288 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RPL39P36-201ENST00000490784 156 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC010587.1-201ENST00000505809 469 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC113155.1-201ENST00000511141 769 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC119751.5-201ENST00000514077 770 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 SCGB1D5P-201ENST00000515134 247 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RNU6-703P-201ENST00000516946 107 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RNA5SP402-201ENST00000517148 110 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 PSMA2P1-201ENST00000526365 646 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 H3F3AP1-201ENST00000559984 334 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 ZNF861P-201ENST00000588126 639 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 BNIP3P8-201ENST00000597863 560 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 AC004805.2-201ENST00000605382 482 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
RPUSD4Q96CM3 CR848007.1-201ENST00000442354 1699 ntBASIC2.15□□□□□ -2.06
RPUSD4Q96CM3 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.15□□□□□ -2.06
RPUSD4Q96CM3 MTND5P1-201ENST00000445440 1375 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RNU5E-1-201ENST00000362477 120 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 SNORA71.3-201ENST00000362582 128 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RNU6-188P-201ENST00000364207 107 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RNU1-100P-201ENST00000365255 165 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 Y_RNA.534-201ENST00000384599 112 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 MIR34B-201ENST00000385076 84 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 MRPL42P2-201ENST00000403169 426 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPS3AP3-201ENST00000411933 242 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 HMGN1P14-201ENST00000412459 517 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPS15AP12-201ENST00000419498 388 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 SKA2P1-201ENST00000425592 390 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC098614.2-201ENST00000426040 255 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL589872.1-201ENST00000426602 288 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL591704.1-201ENST00000432574 275 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPS20P5-201ENST00000434808 360 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 DDX3P2-201ENST00000446138 111 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPS27AP8-201ENST00000452665 445 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC126182.1-201ENST00000478134 357 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RAP1BP2-201ENST00000478270 544 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 BET1P1-201ENST00000482276 359 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPL36AP51-201ENST00000487216 318 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RPS27P26-201ENST00000494583 239 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL358832.1-201ENST00000497800 389 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RAC1P5-201ENST00000512182 576 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 RNU7-51P-201ENST00000516560 62 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 ARL1-211ENST00000551828 776 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC012414.6-201ENST00000568241 401 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 MIR3682-201ENST00000581338 84 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL355598.1-201ENST00000604169 202 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC068276.1-201ENST00000605793 379 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC008498.1-201ENST00000613012 531 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 MIR6075-201ENST00000620782 95 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 THOC1-220ENST00000621904 1083 ntTSL 5 BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 MIR3974-201ENST00000637126 96 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AC110491.1-201ENST00000562191 2010 ntBASIC2.15□□□□□ -2.07
RPUSD4Q96CM3 AL355596.1-201ENST00000565399 3996 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms