Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 MIR5692C1-201ENST00000585309 91 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC005498.1-201ENST00000592125 465 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC021646.1-201ENST00000605469 484 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 BRDTP1-201ENST00000605735 677 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AL022345.1-201ENST00000607292 135 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AL357078.3-201ENST00000607528 618 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 AC005344.1-201ENST00000613391 459 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 MIR6891-201ENST00000618788 93 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 PLCE1P1-201ENST00000622094 305 ntBASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC28AQ8IWP9 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNA5SP191-201ENST00000362585 102 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-384P-201ENST00000364900 104 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 SNORA73.2-201ENST00000364946 201 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 Y_RNA.324-201ENST00000365165 102 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 MIR10A-201ENST00000385043 110 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AL356057.2-201ENST00000403318 432 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RPL5P18-201ENST00000406671 891 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AL365400.1-201ENST00000431854 640 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC005154.2-201ENST00000438110 379 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC006466.1-201ENST00000438721 289 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 MTND4LP16-201ENST00000440828 295 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AL671855.1-201ENST00000446875 1203 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-329P-201ENST00000459618 107 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC087884.1-201ENST00000469738 328 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-507P-201ENST00000516045 100 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-864P-201ENST00000516256 108 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 NACAP3-201ENST00000552100 481 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC005668.1-201ENST00000571142 476 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 MIR4742-201ENST00000581069 85 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC009994.1-201ENST00000606889 253 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC107294.3-201ENST00000609211 526 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 uc_338.5-201ENST00000611839 155 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 AC010680.1-201ENST00000590024 3590 ntBASIC3.35□□□□□ -1.87
CCDC28AQ8IWP9 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-254P-201ENST00000363377 107 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 RNU6-198P-201ENST00000384258 104 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 NDUFB4P5-201ENST00000415445 361 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 PDCL2P1-201ENST00000419302 352 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC125238.1-201ENST00000448842 249 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC010401.1-201ENST00000463867 348 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 RN7SL442P-201ENST00000473804 320 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 RPS27AP10-201ENST00000496103 208 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC114781.4-201ENST00000513707 639 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC087854.1-201ENST00000519706 414 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 CYCSP39-201ENST00000565821 309 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC087463.1-201ENST00000568541 556 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 MIR4737-201ENST00000583979 81 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 MTND4LP5-201ENST00000605152 292 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 SNORA51-201ENST00000606420 132 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 Y_RNA.804-201ENST00000615262 101 ntBASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
CCDC28AQ8IWP9 AC233263.6-201ENST00000631132 1963 ntBASIC3.34□□□□□ -1.88
CCDC28AQ8IWP9 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
CCDC28AQ8IWP9 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms