Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNA5SP283-201ENST00000365604 119 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
USP53Q70EK8 MIR517A-201ENST00000385001 87 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 SNORA11.1-201ENST00000408133 129 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 RNA5SP36-201ENST00000410197 133 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 SNORA74C-2-201ENST00000411179 201 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.19□□□□□ -1.74
USP53Q70EK8 MCFD2P1-201ENST00000417812 300 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.19□□□□□ -1.74
USP53Q70EK8 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.19□□□□□ -1.74
USP53Q70EK8 MTND3P2-201ENST00000438452 342 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 RPS23P3-201ENST00000470993 430 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
USP53Q70EK8 AL132838.2-201ENST00000492041 314 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 HMGN1P11-201ENST00000508668 303 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AC005921.1-201ENST00000510589 286 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 RNA5SP291-201ENST00000517222 105 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AC009902.1-201ENST00000519351 183 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.19□□□□□ -1.74
USP53Q70EK8 DNAJC8P1-201ENST00000554535 372 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC4.19□□□□□ -1.74
USP53Q70EK8 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.19□□□□□ -1.74
USP53Q70EK8 AC123912.5-201ENST00000605470 343 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AL021997.2-201ENST00000615674 271 ntBASIC4.19□□□□□ -1.74
USP53Q70EK8 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.19□□□□□ -1.74
USP53Q70EK8 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.19□□□□□ -1.74
USP53Q70EK8 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC4.19□□□□□ -1.74
USP53Q70EK8 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.19□□□□□ -1.74
USP53Q70EK8 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
USP53Q70EK8 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.18□□□□□ -1.74
USP53Q70EK8 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.18□□□□□ -1.74
USP53Q70EK8 Y_RNA.151-201ENST00000363566 112 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 RNU1-44P-201ENST00000384453 163 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 PTMAP2-201ENST00000397627 327 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL445529.1-201ENST00000398713 389 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 RPL23AP48-201ENST00000406913 488 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL592148.1-201ENST00000413568 445 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AC009237.8-201ENST00000445492 379 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL358232.1-201ENST00000448030 501 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.18□□□□□ -1.74
USP53Q70EK8 RPL21P13-201ENST00000488305 481 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.18□□□□□ -1.74
USP53Q70EK8 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 AC023141.12-201ENST00000512399 199 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 RNU6-470P-201ENST00000515954 104 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 RNA5SP519-201ENST00000516480 119 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 RNA5SP143-201ENST00000516936 115 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AC090281.1-201ENST00000523019 276 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.18□□□□□ -1.74
USP53Q70EK8 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.18□□□□□ -1.74
USP53Q70EK8 TRAV28-201ENST00000557548 323 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AC024220.1-201ENST00000603675 484 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL160290.3-201ENST00000604869 165 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL160281.1-201ENST00000605307 311 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AC083806.3-201ENST00000614016 455 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 MIR8059-201ENST00000620427 81 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 AL359693.1-201ENST00000614959 2407 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
USP53Q70EK8 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
USP53Q70EK8 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
USP53Q70EK8 USP8P1-201ENST00000494673 3183 ntBASIC4.18□□□□□ -1.74
USP53Q70EK8 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
USP53Q70EK8 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.17□□□□□ -1.74
USP53Q70EK8 PNPT1P2-201ENST00000456768 2050 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
USP53Q70EK8 MIR372-201ENST00000362225 67 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNU6-1059P-201ENST00000363752 98 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 SNORD14B-201ENST00000364533 90 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNA5SP513-201ENST00000364648 118 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNA5SP189-201ENST00000364920 115 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNA5SP22-201ENST00000365393 109 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNU6-1032P-201ENST00000384100 107 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 Y_RNA.459-201ENST00000384251 102 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNU6-842P-201ENST00000384269 107 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 RNA5SP372-201ENST00000390836 115 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AL030996.1-201ENST00000411430 235 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.17□□□□□ -1.74
USP53Q70EK8 AC113618.1-201ENST00000416747 285 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 SYF2P2-201ENST00000417620 583 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AL117339.2-201ENST00000430475 180 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.17□□□□□ -1.74
USP53Q70EK8 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.17□□□□□ -1.74
USP53Q70EK8 PIGFP3-201ENST00000441918 722 ntBASIC4.17□□□□□ -1.74
USP53Q70EK8 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 161.3 ms