Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 AC074029.2-201ENST00000551045 634 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC0.75□□□□□ -2.29
CHD9Q3L8U1 MIR4287-201ENST00000579398 78 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 MIR4723-201ENST00000585070 81 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 AC024595.1-201ENST00000623088 387 ntBASIC0.75□□□□□ -2.29
CHD9Q3L8U1 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC016691.1-201ENST00000441321 413 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 SNORA31.8-201ENST00000516327 108 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC025588.4-201ENST00000615802 908 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC009090.3-201ENST00000616553 565 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 MTND4P12-201ENST00000498999 1377 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 SNORA38-201ENST00000363946 132 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 RNU6-1180P-201ENST00000364935 107 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 RNA5SP331-201ENST00000364986 107 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 ZNF92P1Y-201ENST00000415010 1191 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 UBE2D3P2-201ENST00000424409 445 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC092648.1-201ENST00000425870 423 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 UBE2Q2P9-201ENST00000490086 202 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC104108.1-201ENST00000509930 412 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 U6.48-201ENST00000618523 106 ntBASIC0.74□□□□□ -2.29
CHD9Q3L8U1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC0.74□□□□□ -2.29
CHD9Q3L8U1 AL513185.3-201ENST00000433335 1300 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 RPL7L1P10-201ENST00000427790 463 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL356867.1-201ENST00000429623 299 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 UBE2FP3-201ENST00000436366 524 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 HMGN2P10-201ENST00000448085 265 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 BX248409.1-201ENST00000455497 255 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL031183.1-201ENST00000457667 207 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 HMGB3P3-201ENST00000510526 400 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 MED28P6-201ENST00000558776 231 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL138976.2-201ENST00000563989 694 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AP000254.1-201ENST00000609934 520 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 SNRPEP3-201ENST00000338402 276 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 RNU6-98P-201ENST00000384173 107 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 RPL7P29-201ENST00000437151 728 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 SNRPGP6-201ENST00000451124 220 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 SUMO2P2-201ENST00000456482 255 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC117503.1-201ENST00000472241 394 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC004812.1-201ENST00000540773 146 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL355812.1-201ENST00000603215 216 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AP005212.4-201ENST00000614206 710 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC0.73□□□□□ -2.29
CHD9Q3L8U1 AL390862.1-201ENST00000635467 1469 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 MIR627-201ENST00000384979 97 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 CIR1P3-201ENST00000405137 479 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC019070.1-201ENST00000415008 1024 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC009296.1-201ENST00000443146 155 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 OR5BM1P-201ENST00000512021 366 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 MIR5589-201ENST00000579442 60 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL355877.2-201ENST00000603670 358 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 HMGB1P24-202ENST00000615653 685 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC095031.1-201ENST00000623685 672 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 OR4G2P-201ENST00000328113 903 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL356320.2-201ENST00000417263 507 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 XKRYP1-201ENST00000423438 492 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC079780.1-201ENST00000428259 207 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 XKRYP2-201ENST00000432915 492 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL034418.1-201ENST00000448675 860 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 snoU13.4-201ENST00000458916 104 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC135178.6-201ENST00000605314 398 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC106028.5-201ENST00000610332 395 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC126177.8-201ENST00000618339 1015 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AC109809.1-201ENST00000619665 545 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 AL022578.1-201ENST00000439330 1433 ntBASIC0.72□□□□□ -2.29
CHD9Q3L8U1 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.72□□□□□ -2.29
CHD9Q3L8U1 RNA5SP347-201ENST00000362445 119 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 Y_RNA.48-201ENST00000362710 103 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 SNORA46.1-201ENST00000391069 153 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 SSXP10-201ENST00000402595 565 ntBASIC0.71□□□□□ -2.3
CHD9Q3L8U1 AL356421.1-201ENST00000403255 413 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms