Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC2.38□□□□□ -2.03
COL4A4P53420 ENSAP3-201ENST00000312710 333 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 Y_RNA.162-201ENST00000363683 102 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RNU6-1263P-201ENST00000384601 106 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RPL21P75-201ENST00000396599 483 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RPL21P1-201ENST00000399532 476 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 CALM2P3-201ENST00000400429 449 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RPL21P28-201ENST00000401418 483 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AL592114.1-201ENST00000403842 483 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 CCNG1P1-201ENST00000406783 885 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RNU6-575P-201ENST00000411326 105 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC2.38□□□□□ -2.03
COL4A4P53420 AL356583.2-201ENST00000426536 280 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.38□□□□□ -2.03
COL4A4P53420 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC2.38□□□□□ -2.03
COL4A4P53420 RABEPKP1-201ENST00000440529 1026 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 RPL7P31-201ENST00000450192 724 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC2.38□□□□□ -2.03
COL4A4P53420 RPL21P16-201ENST00000495531 483 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC019235.1-201ENST00000503847 207 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC2.38□□□□□ -2.03
COL4A4P53420 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC2.38□□□□□ -2.03
COL4A4P53420 MIR4637-201ENST00000582405 84 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AP001836.1-201ENST00000604675 523 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC005332.6-201ENST00000613178 446 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 USP12-203ENST00000620323 349 ntTSL 3 BASIC2.38□□□□□ -2.03
COL4A4P53420 AC009831.4-201ENST00000620744 325 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC002550.2-201ENST00000621246 394 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 AC107021.2-201ENST00000567714 2095 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
COL4A4P53420 PABPC1P9-201ENST00000426076 1612 ntBASIC2.38□□□□□ -2.03
COL4A4P53420 RNU6-501P-201ENST00000364072 100 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 SNORA4.1-201ENST00000364263 144 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 Y_RNA.372-201ENST00000365599 102 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 MT-TD-201ENST00000387419 68 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 MTCYBP36-201ENST00000404146 440 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 CIR1P3-201ENST00000405137 479 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC013404.1-201ENST00000413068 249 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 BLOC1S2P1-201ENST00000428431 301 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC108667.1-201ENST00000428618 249 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 ARPC3P1-201ENST00000437218 533 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 MTND5P14-201ENST00000441481 1267 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC097499.1-201ENST00000444277 208 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 DPPA3P1-201ENST00000448050 469 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 GAPDHP17-201ENST00000449858 1001 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC013267.1-201ENST00000458227 267 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC068781.1-201ENST00000488231 618 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC105252.1-201ENST00000503089 286 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 MTCYBP17-201ENST00000503579 789 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC091133.4-201ENST00000511142 308 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
COL4A4P53420 TBCAP3-201ENST00000512475 312 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 RNU6-295P-201ENST00000516901 104 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 AF235103.2-201ENST00000525753 346 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 MTND1P35-201ENST00000526739 508 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC022878.1-201ENST00000530684 149 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 OR6C73P-201ENST00000546432 358 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 SNRPGP18-201ENST00000553000 214 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 UBE2V2P2-201ENST00000587677 504 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 BNIP3P4-201ENST00000604946 565 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC107214.2-201ENST00000608204 634 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
COL4A4P53420 STMN1P1-201ENST00000617809 440 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC010378.1-201ENST00000619270 362 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC093591.3-201ENST00000634516 308 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC2.37□□□□□ -2.03
COL4A4P53420 PHKBP1-201ENST00000450951 1951 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AL359893.1-201ENST00000447628 1580 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
COL4A4P53420 RNU6-543P-201ENST00000362576 108 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 RNU6-582P-201ENST00000362989 107 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 Y_RNA.296-201ENST00000364930 108 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 SNORA25.9-201ENST00000365087 128 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 U8.9-201ENST00000365667 134 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC2.37□□□□□ -2.03
COL4A4P53420 RNU6-1103P-201ENST00000384150 107 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC068533.2-201ENST00000411872 306 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.37□□□□□ -2.03
COL4A4P53420 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC2.37□□□□□ -2.03
COL4A4P53420 ACTR3BP6-201ENST00000422332 1241 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 AC092427.1-202ENST00000430569 476 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC2.37□□□□□ -2.03
COL4A4P53420 SEPT7P5-201ENST00000434048 306 ntBASIC2.37□□□□□ -2.03
COL4A4P53420 COX6CP18-201ENST00000448769 222 ntBASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms