Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.36□□□□□ -1.71
MRE11P49959 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.36□□□□□ -1.71
MRE11P49959 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.36□□□□□ -1.71
MRE11P49959 RNU6-1038P-201ENST00000516516 104 ntBASIC4.36□□□□□ -1.71
MRE11P49959 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC4.36□□□□□ -1.71
MRE11P49959 AC109635.4-202ENST00000531666 412 ntBASIC4.36□□□□□ -1.71
MRE11P49959 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MRE11P49959 MDM2-233ENST00000545204 398 ntTSL 5 BASIC4.36□□□□□ -1.71
MRE11P49959 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MRE11P49959 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.36□□□□□ -1.71
MRE11P49959 AC024619.4-201ENST00000580924 316 ntBASIC4.36□□□□□ -1.71
MRE11P49959 MIR4293-201ENST00000584305 78 ntBASIC4.36□□□□□ -1.71
MRE11P49959 AC092807.2-201ENST00000609367 243 ntBASIC4.36□□□□□ -1.71
MRE11P49959 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
MRE11P49959 AC006329.2-201ENST00000611491 394 ntBASIC4.36□□□□□ -1.71
MRE11P49959 MTND4LP32-201ENST00000636111 270 ntBASIC4.36□□□□□ -1.71
MRE11P49959 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
MRE11P49959 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
MRE11P49959 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
MRE11P49959 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
MRE11P49959 MIR369-201ENST00000362155 70 ntBASIC4.35□□□□□ -1.71
MRE11P49959 Y_RNA.167-201ENST00000363735 109 ntBASIC4.35□□□□□ -1.71
MRE11P49959 Y_RNA.339-201ENST00000365325 102 ntBASIC4.35□□□□□ -1.71
MRE11P49959 Y_RNA.378-201ENST00000365652 113 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MIR559-201ENST00000385188 96 ntBASIC4.35□□□□□ -1.71
MRE11P49959 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.35□□□□□ -1.71
MRE11P49959 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
MRE11P49959 UBE2V1P2-201ENST00000397758 440 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RPS29P4-201ENST00000414733 161 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC4.35□□□□□ -1.71
MRE11P49959 AC006989.1-201ENST00000427212 131 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RPS3AP52-201ENST00000435639 297 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RPL36AP6-201ENST00000435770 321 ntBASIC4.35□□□□□ -1.71
MRE11P49959 SNRPFP3-201ENST00000457792 225 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RNU6-1208P-201ENST00000459588 107 ntBASIC4.35□□□□□ -1.71
MRE11P49959 VN1R17P-201ENST00000472048 1090 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RPS4XP22-201ENST00000480755 780 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AC083904.1-201ENST00000487828 231 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AC135721.1-201ENST00000497954 479 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC4.35□□□□□ -1.71
MRE11P49959 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC4.35□□□□□ -1.71
MRE11P49959 CCDC34P1-201ENST00000507441 517 ntBASIC4.35□□□□□ -1.71
MRE11P49959 RNA5SP309-201ENST00000516670 106 ntBASIC4.35□□□□□ -1.71
MRE11P49959 Y_RNA.718-201ENST00000517110 102 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MTND4P7-201ENST00000523876 130 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MRE11P49959 ELOCP31-201ENST00000540463 467 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC4.35□□□□□ -1.71
MRE11P49959 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.35□□□□□ -1.71
MRE11P49959 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MRE11P49959 MIR5583-1-201ENST00000580941 59 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MIR3942-201ENST00000585264 109 ntBASIC4.35□□□□□ -1.71
MRE11P49959 BNIP3P25-201ENST00000596023 559 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AP001330.4-201ENST00000604350 154 ntBASIC4.35□□□□□ -1.71
MRE11P49959 U3.45-201ENST00000607547 219 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MIR7151-201ENST00000617477 60 ntBASIC4.35□□□□□ -1.71
MRE11P49959 MIR6500-201ENST00000622700 86 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AC244517.5-202ENST00000623741 500 ntTSL 3 BASIC4.35□□□□□ -1.71
MRE11P49959 U6.114-201ENST00000636407 96 ntBASIC4.35□□□□□ -1.71
MRE11P49959 AP001350.1-201ENST00000601906 1524 ntBASIC4.35□□□□□ -1.71
MRE11P49959 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC4.35□□□□□ -1.71
MRE11P49959 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
MRE11P49959 SRP72P2-201ENST00000344851 1979 ntBASIC4.34□□□□□ -1.71
MRE11P49959 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.34□□□□□ -1.71
MRE11P49959 RNA5SP399-201ENST00000364003 117 ntBASIC4.34□□□□□ -1.71
MRE11P49959 Y_RNA.216-201ENST00000364205 93 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RNU6-188P-201ENST00000364207 107 ntBASIC4.34□□□□□ -1.71
MRE11P49959 SNORA63C-201ENST00000364578 129 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RNA5SP189-201ENST00000364920 115 ntBASIC4.34□□□□□ -1.71
MRE11P49959 SNORD115-7-201ENST00000365306 82 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RNU6-1013P-201ENST00000384180 107 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RNU4-14P-201ENST00000410858 122 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RNU6-516P-201ENST00000411381 104 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC114491.1-201ENST00000416095 246 ntBASIC4.34□□□□□ -1.71
MRE11P49959 EI24P1-201ENST00000416584 867 ntBASIC4.34□□□□□ -1.71
MRE11P49959 BEND7P1-201ENST00000422058 457 ntBASIC4.34□□□□□ -1.71
MRE11P49959 BX679664.1-201ENST00000434429 253 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.34□□□□□ -1.71
MRE11P49959 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC4.34□□□□□ -1.71
MRE11P49959 Y_RNA.635-201ENST00000459041 101 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RN7SL442P-201ENST00000473804 320 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC012181.1-201ENST00000479895 423 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC027575.1-201ENST00000481064 460 ntBASIC4.34□□□□□ -1.71
MRE11P49959 RN7SL293P-201ENST00000481765 281 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC005921.1-201ENST00000510589 286 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC005741.1-201ENST00000511094 432 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC4.34□□□□□ -1.71
MRE11P49959 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC4.34□□□□□ -1.71
MRE11P49959 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.34□□□□□ -1.71
MRE11P49959 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.34□□□□□ -1.71
MRE11P49959 AC120057.2-201ENST00000571520 271 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC4.34□□□□□ -1.71
MRE11P49959 AC006270.2-201ENST00000578523 652 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.34□□□□□ -1.71
MRE11P49959 AC006504.6-201ENST00000590142 199 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.34□□□□□ -1.71
MRE11P49959 SNRPGP17-201ENST00000603780 214 ntBASIC4.34□□□□□ -1.71
MRE11P49959 APOOP1-201ENST00000604695 592 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AL592436.1-201ENST00000605135 558 ntBASIC4.34□□□□□ -1.71
MRE11P49959 AL627309.6-201ENST00000606857 840 ntBASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms