Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL031274.1-201ENST00000450334 232 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC112492.4-201ENST00000456549 352 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 RNU6-1037P-201ENST00000459571 107 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC022447.4-201ENST00000504053 364 ntBASIC4.64□□□□□ -1.67
LIG3P49916 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.64□□□□□ -1.67
LIG3P49916 AC007016.1-201ENST00000512110 244 ntBASIC4.64□□□□□ -1.67
LIG3P49916 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.64□□□□□ -1.67
LIG3P49916 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.64□□□□□ -1.67
LIG3P49916 AC004024.1-201ENST00000549244 247 ntBASIC4.64□□□□□ -1.67
LIG3P49916 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC4.64□□□□□ -1.67
LIG3P49916 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 AL138721.1-201ENST00000616756 179 ntBASIC4.64□□□□□ -1.67
LIG3P49916 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 FP236240.3-201ENST00000623061 327 ntBASIC4.64□□□□□ -1.67
LIG3P49916 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
LIG3P49916 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.64□□□□□ -1.67
LIG3P49916 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.64□□□□□ -1.67
LIG3P49916 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG3P49916 AC066616.2-201ENST00000559334 1481 ntBASIC4.63□□□□□ -1.67
LIG3P49916 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
LIG3P49916 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
LIG3P49916 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 RNU1-32P-201ENST00000363937 159 ntBASIC4.63□□□□□ -1.67
LIG3P49916 RNU6-450P-201ENST00000364654 107 ntBASIC4.63□□□□□ -1.67
LIG3P49916 RNU6-384P-201ENST00000364900 104 ntBASIC4.63□□□□□ -1.67
LIG3P49916 SET-203ENST00000372688 801 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG3P49916 DNAJC19P7-201ENST00000428811 344 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG3P49916 RPS15AP10-201ENST00000432472 382 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG3P49916 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.63□□□□□ -1.67
LIG3P49916 AL162591.2-201ENST00000449634 317 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AL353752.1-201ENST00000454946 260 ntBASIC4.63□□□□□ -1.67
LIG3P49916 snoU13.1-201ENST00000459157 104 ntBASIC4.63□□□□□ -1.67
LIG3P49916 FTH1P2-201ENST00000466086 412 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AC069499.1-201ENST00000489433 509 ntBASIC4.63□□□□□ -1.67
LIG3P49916 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG3P49916 AC105758.1-201ENST00000506038 399 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC4.63□□□□□ -1.67
LIG3P49916 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 AP001781.1-201ENST00000530977 207 ntBASIC4.63□□□□□ -1.67
LIG3P49916 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 AC046130.2-201ENST00000537655 794 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG3P49916 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC4.63□□□□□ -1.67
LIG3P49916 SNORD58B-201ENST00000607313 66 ntBASIC4.63□□□□□ -1.67
LIG3P49916 AL713922.2-201ENST00000619384 716 ntBASIC4.63□□□□□ -1.67
LIG3P49916 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.63□□□□□ -1.67
LIG3P49916 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
LIG3P49916 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
LIG3P49916 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.62□□□□□ -1.67
LIG3P49916 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC4.62□□□□□ -1.67
LIG3P49916 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-37P-201ENST00000362692 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-11P-201ENST00000364234 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-99P-201ENST00000364721 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-7-201ENST00000364784 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-8-201ENST00000365467 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-25P-201ENST00000383873 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-1-201ENST00000383898 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-48P-201ENST00000384161 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-36P-201ENST00000384172 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-4P-201ENST00000384205 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-5P-201ENST00000384238 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-3P-201ENST00000384314 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-16P-201ENST00000384385 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 Y_RNA.485-201ENST00000384395 102 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-15P-201ENST00000384534 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-2-201ENST00000384627 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-29P-201ENST00000384637 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-9-201ENST00000384776 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-33P-201ENST00000384793 107 ntBASIC4.62□□□□□ -1.67
LIG3P49916 MT-TG-201ENST00000387429 68 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU6-823P-201ENST00000391042 103 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RNU2-33P-201ENST00000410344 192 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AL592148.1-201ENST00000413568 445 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG3P49916 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG3P49916 RPL7P2-201ENST00000427639 268 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RPL23AP1-201ENST00000428990 471 ntBASIC4.62□□□□□ -1.67
LIG3P49916 RPL21P91-201ENST00000429231 479 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.62□□□□□ -1.67
LIG3P49916 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.62□□□□□ -1.67
LIG3P49916 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms