Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AP001180.6-201ENST00000584918 159 ntBASIC0.42□□□□□ -2.34
VCANP13611 AC109809.1-201ENST00000619665 545 ntBASIC0.42□□□□□ -2.34
VCANP13611 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC0.42□□□□□ -2.34
VCANP13611 MTND5P8-201ENST00000449817 1083 ntBASIC0.42□□□□□ -2.34
VCANP13611 OR6C72P-201ENST00000451403 892 ntBASIC0.42□□□□□ -2.34
VCANP13611 LINC02311-201ENST00000556144 383 ntTSL 3 BASIC0.42□□□□□ -2.34
VCANP13611 AC008751.2-201ENST00000597885 980 ntBASIC0.42□□□□□ -2.34
VCANP13611 AC004908.2-201ENST00000609090 574 ntBASIC0.42□□□□□ -2.34
VCANP13611 AC097372.5-201ENST00000623665 376 ntBASIC0.42□□□□□ -2.34
VCANP13611 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC0.42□□□□□ -2.34
VCANP13611 Y_RNA.514-201ENST00000384528 112 ntBASIC0.42□□□□□ -2.34
VCANP13611 RNA5SP450-201ENST00000411206 102 ntBASIC0.42□□□□□ -2.34
VCANP13611 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC0.42□□□□□ -2.34
VCANP13611 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC0.42□□□□□ -2.34
VCANP13611 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC0.42□□□□□ -2.34
VCANP13611 AC083865.1-201ENST00000636634 831 ntBASIC0.42□□□□□ -2.34
VCANP13611 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
VCANP13611 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC0.41□□□□□ -2.34
VCANP13611 Y_RNA.468-201ENST00000384298 102 ntBASIC0.41□□□□□ -2.34
VCANP13611 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC0.41□□□□□ -2.34
VCANP13611 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
VCANP13611 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC0.41□□□□□ -2.34
VCANP13611 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
VCANP13611 RNU6-629P-201ENST00000384061 103 ntBASIC0.41□□□□□ -2.34
VCANP13611 VPS26BP1-201ENST00000417155 755 ntBASIC0.41□□□□□ -2.34
VCANP13611 AL356867.1-201ENST00000429623 299 ntBASIC0.41□□□□□ -2.34
VCANP13611 PRELID3BP1-201ENST00000457142 540 ntBASIC0.41□□□□□ -2.34
VCANP13611 AC020699.1-201ENST00000505161 445 ntBASIC0.41□□□□□ -2.34
VCANP13611 RNY1P9-201ENST00000532431 109 ntBASIC0.41□□□□□ -2.34
VCANP13611 MIR548AX-201ENST00000580117 73 ntBASIC0.41□□□□□ -2.34
VCANP13611 AC106052.1-201ENST00000608029 497 ntBASIC0.41□□□□□ -2.34
VCANP13611 AP001486.3-201ENST00000615334 372 ntBASIC0.41□□□□□ -2.34
VCANP13611 MIR4278-201ENST00000636094 69 ntBASIC0.41□□□□□ -2.34
VCANP13611 RPL21P104-201ENST00000464143 478 ntBASIC0.4□□□□□ -2.34
VCANP13611 KLRA1P-201ENST00000503499 986 ntBASIC0.4□□□□□ -2.34
VCANP13611 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC0.4□□□□□ -2.34
VCANP13611 MIR4474-201ENST00000579189 78 ntBASIC0.4□□□□□ -2.34
VCANP13611 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.34
VCANP13611 ZNF33CP-201ENST00000432492 2030 ntBASIC0.4□□□□□ -2.35
VCANP13611 HMGB3P10-201ENST00000434734 572 ntBASIC0.4□□□□□ -2.35
VCANP13611 AC002545.1-201ENST00000592511 181 ntBASIC0.4□□□□□ -2.35
VCANP13611 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC0.4□□□□□ -2.35
VCANP13611 RNU6-178P-201ENST00000384631 104 ntBASIC0.4□□□□□ -2.35
VCANP13611 HMGB1P17-201ENST00000403495 628 ntBASIC0.4□□□□□ -2.35
VCANP13611 MTCO3P4-201ENST00000419236 787 ntBASIC0.4□□□□□ -2.35
VCANP13611 AC135178.6-201ENST00000605314 398 ntBASIC0.4□□□□□ -2.35
VCANP13611 AL137003.2-201ENST00000606924 2538 ntBASIC0.39□□□□□ -2.35
VCANP13611 UBBP3-201ENST00000445497 241 ntBASIC0.39□□□□□ -2.35
VCANP13611 EIF4EP3-201ENST00000498782 656 ntBASIC0.39□□□□□ -2.35
VCANP13611 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
VCANP13611 UBE2FP1-201ENST00000416536 447 ntBASIC0.39□□□□□ -2.35
VCANP13611 AL139230.1-201ENST00000440094 425 ntTSL 3 BASIC0.39□□□□□ -2.35
VCANP13611 AC098862.1-201ENST00000504991 413 ntBASIC0.39□□□□□ -2.35
VCANP13611 RRN3P3-201ENST00000549207 578 ntBASIC0.39□□□□□ -2.35
VCANP13611 MTCO3P24-201ENST00000572729 782 ntBASIC0.39□□□□□ -2.35
VCANP13611 AL096840.1-201ENST00000603287 93 ntBASIC0.39□□□□□ -2.35
VCANP13611 AP001485.1-201ENST00000604799 199 ntBASIC0.39□□□□□ -2.35
VCANP13611 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC0.39□□□□□ -2.35
VCANP13611 MIR92A1-201ENST00000385233 78 ntBASIC0.39□□□□□ -2.35
VCANP13611 UBE2V2P3-201ENST00000433562 437 ntBASIC0.39□□□□□ -2.35
VCANP13611 RNU6-928P-201ENST00000516876 104 ntBASIC0.39□□□□□ -2.35
VCANP13611 AL355297.2-201ENST00000604792 129 ntBASIC0.39□□□□□ -2.35
VCANP13611 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
VCANP13611 RFESDP1-201ENST00000422350 461 ntBASIC0.38□□□□□ -2.35
VCANP13611 AC073464.3-201ENST00000422564 712 ntBASIC0.38□□□□□ -2.35
VCANP13611 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC0.38□□□□□ -2.35
VCANP13611 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC0.38□□□□□ -2.35
VCANP13611 TPT1P8-201ENST00000510120 555 ntBASIC0.38□□□□□ -2.35
VCANP13611 AL592148.2-201ENST00000612210 372 ntBASIC0.38□□□□□ -2.35
VCANP13611 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC0.38□□□□□ -2.35
VCANP13611 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC0.38□□□□□ -2.35
VCANP13611 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.38□□□□□ -2.35
VCANP13611 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
VCANP13611 MIR26B-201ENST00000362251 77 ntBASIC0.38□□□□□ -2.35
VCANP13611 SNORA22-201ENST00000383907 134 ntBASIC0.38□□□□□ -2.35
VCANP13611 SNORA22C-201ENST00000384614 134 ntBASIC0.38□□□□□ -2.35
VCANP13611 RNU4ATAC16P-201ENST00000408512 126 ntBASIC0.38□□□□□ -2.35
VCANP13611 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC0.38□□□□□ -2.35
VCANP13611 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC0.38□□□□□ -2.35
VCANP13611 SDR42E1P2-201ENST00000614861 481 ntBASIC0.38□□□□□ -2.35
VCANP13611 SDR42E1P4-201ENST00000620894 481 ntBASIC0.38□□□□□ -2.35
VCANP13611 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
VCANP13611 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
VCANP13611 RNU6-1184P-201ENST00000384588 108 ntBASIC0.37□□□□□ -2.35
VCANP13611 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC0.37□□□□□ -2.35
VCANP13611 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC0.37□□□□□ -2.35
VCANP13611 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.37□□□□□ -2.35
VCANP13611 AL121890.5-201ENST00000620848 304 ntBASIC0.37□□□□□ -2.35
VCANP13611 AP000567.1-201ENST00000406413 156 ntBASIC0.37□□□□□ -2.35
VCANP13611 AC083875.1-201ENST00000419509 405 ntBASIC0.37□□□□□ -2.35
VCANP13611 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.37□□□□□ -2.35
VCANP13611 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.37□□□□□ -2.35
VCANP13611 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC0.37□□□□□ -2.35
VCANP13611 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.37□□□□□ -2.35
VCANP13611 AC008083.4-201ENST00000615076 444 ntBASIC0.37□□□□□ -2.35
VCANP13611 SNORD114-3-201ENST00000364969 75 ntBASIC0.36□□□□□ -2.35
VCANP13611 Y_RNA.495-201ENST00000384435 112 ntBASIC0.36□□□□□ -2.35
VCANP13611 RPS3AP36-201ENST00000398190 775 ntBASIC0.36□□□□□ -2.35
VCANP13611 TMEM167AP1-201ENST00000423409 219 ntBASIC0.36□□□□□ -2.35
VCANP13611 PMCHL2-203ENST00000457791 237 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms