Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 U8.20-201ENST00000459445 131 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 RPL9P9-202ENST00000466501 579 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC108751.2-201ENST00000469993 231 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 KC877373.1-201ENST00000479066 408 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.63□□□□□ -1.83
HOXA3O43365 RNU6-635P-201ENST00000516651 102 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC007991.1-201ENST00000522680 631 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AP000827.1-201ENST00000527814 258 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA3O43365 VN1R107P-201ENST00000601784 209 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC018889.1-201ENST00000605372 397 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 AC020634.1-201ENST00000608701 549 ntBASIC3.63□□□□□ -1.83
HOXA3O43365 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXA3O43365 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA3O43365 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.63□□□□□ -1.83
HOXA3O43365 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
HOXA3O43365 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
HOXA3O43365 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.63□□□□□ -1.83
HOXA3O43365 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.63□□□□□ -1.83
HOXA3O43365 MAPK10-303ENST00000641324 3959 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA3O43365 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
HOXA3O43365 Y_RNA.126-201ENST00000363382 111 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 RNU6-823P-201ENST00000391042 103 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AL513475.1-201ENST00000406602 315 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 RNU6-101P-201ENST00000410323 104 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 Y_RNA.623-201ENST00000411128 95 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 SNORD56-201ENST00000413522 71 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AL627311.1-201ENST00000431514 115 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AL353997.1-201ENST00000432936 108 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA3O43365 RPS26P2-201ENST00000440331 348 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 PIGFP3-201ENST00000441918 722 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA3O43365 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA3O43365 AL583843.1-201ENST00000456070 346 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 RN7SL98P-201ENST00000462271 300 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 FO393415.2-201ENST00000480085 343 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AC139453.3-201ENST00000493276 369 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AC105758.1-201ENST00000506038 399 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 RNU6-475P-201ENST00000516073 104 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 Vault.1-201ENST00000516474 102 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 CBX3P8-201ENST00000532412 525 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.62□□□□□ -1.83
HOXA3O43365 AL161670.1-201ENST00000554348 137 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 HSBP1P1-201ENST00000555205 166 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 AC110588.1-201ENST00000559699 137 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 PRR13P7-201ENST00000605538 430 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 SNX18P1Y-201ENST00000616231 511 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 FP236240.3-201ENST00000623061 327 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
HOXA3O43365 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA3O43365 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 AC125257.1-201ENST00000560400 2930 ntBASIC3.62□□□□□ -1.83
HOXA3O43365 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
HOXA3O43365 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
HOXA3O43365 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.62□□□□□ -1.83
HOXA3O43365 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.61□□□□□ -1.83
HOXA3O43365 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA3O43365 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 AC007685.1-201ENST00000329806 452 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 RNU6-238P-201ENST00000363313 106 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 SNORA7.2-201ENST00000364446 145 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 SNORD14B-201ENST00000364533 90 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 RNU6-1317P-201ENST00000364582 104 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 RNU6-450P-201ENST00000364654 107 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 SET-203ENST00000372688 801 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA3O43365 Y_RNA.424-201ENST00000384063 103 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 SNORA70C-201ENST00000384538 135 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 Y_RNA.574-201ENST00000384766 95 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 Y_RNA.577-201ENST00000384794 101 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 RNU6-1156P-201ENST00000410365 100 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA3O43365 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA3O43365 AC108059.2-201ENST00000434626 151 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 AL731563.1-201ENST00000442202 214 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC3.61□□□□□ -1.83
HOXA3O43365 AC026402.1-201ENST00000513642 170 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 RNA5SP291-201ENST00000517222 105 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 MRPL49P2-201ENST00000521066 465 ntBASIC3.61□□□□□ -1.83
HOXA3O43365 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
HOXA3O43365 EGLN3-AS1-201ENST00000555922 308 ntTSL 3 BASIC3.61□□□□□ -1.83
HOXA3O43365 AC007224.1-201ENST00000564410 144 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms