Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL031183.1-201ENST00000457667 207 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 UBE2DNL-203ENST00000474922 222 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AC108022.1-201ENST00000493466 478 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AC091885.1-201ENST00000506658 268 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MEPE-206ENST00000511670 550 ntTSL 4 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 SNORA31.19-201ENST00000517079 126 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MYL12AP1-201ENST00000518490 515 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AC009902.1-201ENST00000519351 183 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 H3F3AP1-201ENST00000559984 334 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 AL138976.2-201ENST00000563989 694 ntBASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
CCDC9Q9Y3X0 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC004520.1-201ENST00000608362 1413 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 RNU1-73P-201ENST00000383971 164 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-45P-201ENST00000384471 107 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 U3.26-201ENST00000391236 204 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 NDUFS5P4-201ENST00000412983 318 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 NAP1L1P2-201ENST00000414182 1089 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MTND1P23-201ENST00000416931 372 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AL353729.1-201ENST00000425044 720 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC098614.2-201ENST00000426040 255 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MTND1P2-201ENST00000430604 821 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MTCO2P3-201ENST00000442543 421 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 BRK1P2-201ENST00000442875 223 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 RPS15AP27-201ENST00000449183 343 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 GAS5-223ENST00000452197 483 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MTND3P16-201ENST00000452205 344 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 RPL21P10-201ENST00000463521 490 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC004801.2-202ENST00000463559 283 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC008716.1-201ENST00000511084 513 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC112206.3-201ENST00000514578 389 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-572P-201ENST00000516724 80 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AL391261.3-201ENST00000557194 520 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MIR5583-1-201ENST00000580941 59 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MIR4801-201ENST00000582704 82 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MIR5187-201ENST00000583479 76 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC010525.2-201ENST00000590920 195 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MTND4LP5-201ENST00000605152 292 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC119674.1-207ENST00000641355 633 ntBASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
CCDC9Q9Y3X0 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 MIR412-201ENST00000362142 91 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-371P-201ENST00000364283 108 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-658P-201ENST00000384606 106 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RNU6-373P-201ENST00000411247 98 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 HIGD1AP11-201ENST00000438361 280 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RPS3AP46-201ENST00000448352 682 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC128713.1-201ENST00000471495 306 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RPL21P99-201ENST00000480369 423 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 HMGB1P30-201ENST00000492455 606 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC022493.1-201ENST00000492984 337 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 MTCO3P9-201ENST00000506989 781 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 SNORD59.2-201ENST00000516873 68 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 MIR4424-201ENST00000585257 86 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC007938.3-201ENST00000604965 623 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AL161629.2-201ENST00000615347 275 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 HOTTIP_4.1-201ENST00000618195 165 ntBASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
CCDC9Q9Y3X0 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 Y_RNA.231-201ENST00000364358 102 ntBASIC5.16□□□□□ -1.58
CCDC9Q9Y3X0 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms