Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC079741.1-201ENST00000321498 212 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 DDX39BP1-205ENST00000422507 192 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC112498.1-201ENST00000444401 332 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC073264.2-201ENST00000448886 166 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 MTATP6P7-201ENST00000453315 681 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC090602.1-201ENST00000469695 252 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC074050.1-201ENST00000563247 211 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ZNF192P1-203ENST00000565888 810 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC079070.1-201ENST00000578740 555 ntTSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 MIR4282-201ENST00000583613 67 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AL591926.8-201ENST00000616876 211 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 MFSD8-216ENST00000641147 4009 ntBASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LIMD1Q9UGP4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RNU6-858P-201ENST00000362436 107 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.82-201ENST00000363000 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.92-201ENST00000363043 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.230-201ENST00000364348 109 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.235-201ENST00000364412 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.306-201ENST00000365015 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.312-201ENST00000365089 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.322-201ENST00000365151 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RNA5SP213-201ENST00000391031 106 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 SNORA46.1-201ENST00000391069 153 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RNU6-493P-201ENST00000391321 108 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RPL23AP81-201ENST00000455252 467 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.650-201ENST00000459002 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 AC010326.1-201ENST00000462726 602 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RPS29P26-201ENST00000477483 171 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.777-201ENST00000516982 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 CYCSP39-201ENST00000565821 309 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 RN7SL356P-201ENST00000582228 248 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.771-201ENST00000598668 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 AL590392.1-201ENST00000604960 446 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 MIR6780A-201ENST00000615089 68 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 Y_RNA.789-201ENST00000622480 102 ntBASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LIMD1Q9UGP4 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 UBE2WP1-201ENST00000362030 340 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 RNA5SP428-201ENST00000365129 132 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 SNORD50.2-201ENST00000365465 70 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 RPL34P20-201ENST00000442771 351 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC117440.1-201ENST00000474107 571 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 UBE2CP3-201ENST00000502715 450 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 RNU6-1183P-201ENST00000517054 60 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC090281.1-201ENST00000523019 276 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AL138963.2-201ENST00000605137 226 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC005296.1-201ENST00000616145 209 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 AC008785.1-201ENST00000624475 456 ntBASIC5.4□□□□□ -1.54
LIMD1Q9UGP4 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 AC125336.1-201ENST00000508893 2827 ntBASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
LIMD1Q9UGP4 SDAD1P1-202ENST00000524156 2051 ntBASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.39□□□□□ -1.55
LIMD1Q9UGP4 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 192.8 ms