Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 ZNF863P-201ENST00000426746 417 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL021397.1-201ENST00000451806 248 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 OR6C5P-201ENST00000452388 923 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC008481.1-201ENST00000463278 396 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 KLF3P2-201ENST00000465138 268 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 DYNLL1P5-201ENST00000467158 270 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL121769.1-201ENST00000469473 401 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC104685.1-201ENST00000502445 371 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC234778.2-201ENST00000566241 354 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC009127.3-201ENST00000570531 403 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC136618.2-201ENST00000575091 400 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 RPS15AP11-201ENST00000594193 385 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL391001.1-201ENST00000602747 715 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 BCRP9-201ENST00000605312 388 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC103810.6-201ENST00000606708 136 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC027449.1-201ENST00000608890 407 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC005332.10-201ENST00000612725 619 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL136313.1-201ENST00000624804 202 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AC006927.4-201ENST00000639187 543 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 PSMD5-AS1-215ENST00000640622 205 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 MTND4P27-201ENST00000450813 1354 ntBASIC1.98□□□□□ -2.09
EXOSC4Q9NPD3 AL596028.1-201ENST00000326971 197 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 FAM133CP-201ENST00000332869 704 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP88-201ENST00000365560 109 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 RPS4XP8-201ENST00000402039 771 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 RNA5SP338-201ENST00000410495 85 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 MTND1P20-201ENST00000430341 950 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL161935.3-201ENST00000433770 347 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL139109.1-201ENST00000455491 297 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 ANKRD26P4-201ENST00000455755 950 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC025033.1-201ENST00000463883 194 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 MRPL42P6-201ENST00000486397 371 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 RNU4-29P-201ENST00000515943 174 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 RNU6-311P-201ENST00000516224 102 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC025524.1-201ENST00000518489 606 ntTSL 4 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC105185.1-201ENST00000518705 535 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC002984.1-201ENST00000591692 448 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 BNIP3P40-201ENST00000596017 556 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL031281.1-201ENST00000604049 488 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC107952.2-201ENST00000606048 486 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC007038.2-201ENST00000608095 740 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC107294.1-201ENST00000609524 467 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AL589743.7-201ENST00000612637 233 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC025594.3-201ENST00000613068 790 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AC007998.5-201ENST00000622938 237 ntBASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.97□□□□□ -2.09
EXOSC4Q9NPD3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.09
EXOSC4Q9NPD3 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 TLK1-206ENST00000434911 2156 ntTSL 2 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 ZNF736P9Y-201ENST00000439586 1345 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-223P-201ENST00000362830 107 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RNA5SP160-201ENST00000364866 120 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-769P-201ENST00000384407 104 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 MIR524-201ENST00000385242 87 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-750P-201ENST00000390946 107 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 AL139397.2-201ENST00000404529 772 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 NDUFB4P4-201ENST00000404822 243 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 RNU6-920P-201ENST00000410926 92 ntBASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.96□□□□□ -2.1
EXOSC4Q9NPD3 HMGB1P11-201ENST00000413899 637 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 125.3 ms