Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC117522.1-201ENST00000509821 380 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC108078.2-201ENST00000510750 236 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RNA5SP385-201ENST00000515947 110 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RNU6-506P-201ENST00000516553 94 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 Y_RNA.689-201ENST00000516589 107 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 SNORD59.2-201ENST00000516873 68 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RNU6-928P-201ENST00000516876 104 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC245166.1-201ENST00000521012 253 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC068587.5-201ENST00000528506 175 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC016229.1-201ENST00000589242 487 ntTSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC080078.2-201ENST00000603766 501 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC098826.3-201ENST00000603823 466 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AL161756.2-201ENST00000604597 246 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AP001596.2-201ENST00000608410 312 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AL365204.3-201ENST00000612448 685 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC034102.8-201ENST00000615146 484 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC007998.5-201ENST00000622938 237 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AL157786.1-207ENST00000627771 695 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AC007785.2-201ENST00000598627 1916 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 AL356274.2-201ENST00000624379 3752 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 MTND5P7-201ENST00000413558 1798 ntBASIC2.77□□□□□ -1.97
NKX3-1Q99801 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 MTND4P5-201ENST00000435821 1374 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC093831.2-201ENST00000624393 3427 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
NKX3-1Q99801 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
NKX3-1Q99801 RNU6-1167P-201ENST00000363227 94 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 RNU6-270P-201ENST00000364131 105 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 RNU6-61P-201ENST00000365528 109 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 MIR491-201ENST00000384877 84 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 MTCO3P40-201ENST00000392516 676 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 Y_RNA.619-201ENST00000410951 90 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 ISCA1P1-201ENST00000426679 387 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 MTND4P25-201ENST00000441039 533 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 BNIP3P2-201ENST00000441221 577 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 RPS24P13-201ENST00000442520 397 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC079781.2-201ENST00000446424 169 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC093392.2-201ENST00000450682 337 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 RBMY2UP-201ENST00000453474 324 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 BX510359.1-201ENST00000456973 237 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC087588.1-201ENST00000462203 316 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 MRPS17P3-201ENST00000465453 385 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC006512.1-201ENST00000468816 291 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 RPL30P5-201ENST00000494923 336 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC010493.1-201ENST00000513479 292 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 OR5G4P-201ENST00000525251 760 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 TRAV28-201ENST00000557548 323 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC104763.2-201ENST00000604179 382 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AL161798.1-201ENST00000604630 131 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AL591516.1-201ENST00000611326 274 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC068831.7-201ENST00000616954 363 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 ZNF680P1-201ENST00000436625 1469 ntBASIC2.76□□□□□ -1.97
NKX3-1Q99801 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.76□□□□□ -1.97
NKX3-1Q99801 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC090740.1-201ENST00000623193 2262 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 OR4G2P-201ENST00000328113 903 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 SNORA62.1-201ENST00000364287 154 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 U3.19-201ENST00000390893 196 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AL591416.1-201ENST00000404015 867 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 RNU2-33P-201ENST00000410344 192 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 RNU6-1077P-201ENST00000410506 102 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 RPS12P24-201ENST00000412619 387 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC245054.2-201ENST00000415639 319 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AL158156.1-201ENST00000422509 473 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AL512844.2-201ENST00000433990 593 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 SNRPEP4-201ENST00000435815 279 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC005019.1-201ENST00000436455 431 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 FABP5P13-201ENST00000452144 328 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC2.75□□□□□ -1.97
NKX3-1Q99801 AC093899.1-201ENST00000457984 376 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 RPS20P22-201ENST00000473700 357 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 HMGN2P13-201ENST00000476476 274 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 ARL4AP2-201ENST00000507378 601 ntBASIC2.75□□□□□ -1.97
NKX3-1Q99801 MTND4LP22-201ENST00000508209 276 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 144.8 ms