Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNA5SP120-201ENST00000410900 112 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 Z85995.1-201ENST00000415547 335 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 RPL7P46-201ENST00000425129 740 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 AL592045.1-201ENST00000429867 352 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.04□□□□□ -1.76
NUP88Q99567 ELOCP23-201ENST00000452014 332 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 RN7SL601P-201ENST00000471221 293 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 RPS15AP34-201ENST00000487776 387 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 RPL39P36-201ENST00000490784 156 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 AC093663.1-201ENST00000497190 394 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 RNU6-579P-201ENST00000516879 102 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC4.04□□□□□ -1.76
NUP88Q99567 ZNF192P1-203ENST00000565888 810 ntBASIC4.04□□□□□ -1.76
NUP88Q99567 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.04□□□□□ -1.76
NUP88Q99567 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
NUP88Q99567 GABRG2-222ENST00000639975 3662 ntTSL 5 BASIC4.04□□□□□ -1.76
NUP88Q99567 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.04□□□□□ -1.76
NUP88Q99567 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
NUP88Q99567 AC004972.1-201ENST00000623934 2209 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 TBC1D15-210ENST00000485960 2489 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NUP88Q99567 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NUP88Q99567 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 TPTE2P4-201ENST00000258589 1605 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNY3P3-201ENST00000363816 102 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
NUP88Q99567 RNU6-550P-201ENST00000391057 101 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNU6-903P-201ENST00000391270 109 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 RNU2-33P-201ENST00000410344 192 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNU4-46P-201ENST00000410818 138 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 OR9R1P-201ENST00000412200 877 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 MTND4LP11-201ENST00000422184 280 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 UBE2D3P2-201ENST00000424409 445 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AC006989.1-201ENST00000427212 131 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AL512844.2-201ENST00000433990 593 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RBMX2P4-201ENST00000441256 376 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 AC115115.1-201ENST00000449927 248 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AL118520.1-201ENST00000450770 291 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNA5SP310-201ENST00000459084 116 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 EIF4EP3-201ENST00000498782 656 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 RNU4-29P-201ENST00000515943 174 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNU4ATAC8P-201ENST00000516196 109 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.03□□□□□ -1.76
NUP88Q99567 PCLAF-207ENST00000559519 749 ntTSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 BNIP3P30-201ENST00000601184 574 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 AL020991.1-201ENST00000612314 373 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 RNVU1-4-201ENST00000612985 164 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AC010338.1-201ENST00000621823 717 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC4.03□□□□□ -1.76
NUP88Q99567 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NUP88Q99567 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC4.03□□□□□ -1.76
NUP88Q99567 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 AC087521.2-201ENST00000499066 2190 ntTSL 2 BASIC4.03□□□□□ -1.76
NUP88Q99567 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
NUP88Q99567 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.03□□□□□ -1.76
NUP88Q99567 AL354685.2-201ENST00000448218 1447 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 FAM35BP-202ENST00000497389 3337 ntBASIC4.03□□□□□ -1.76
NUP88Q99567 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC4.03□□□□□ -1.76
NUP88Q99567 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
NUP88Q99567 AC103710.2-202ENST00000641454 2853 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 ASNSP3-201ENST00000451989 1306 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 RIOK3P1-201ENST00000418778 1528 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
NUP88Q99567 RNA5SP197-201ENST00000363357 119 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 RNU6-525P-201ENST00000363685 104 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 MIR483-201ENST00000385070 76 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NUP88Q99567 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
NUP88Q99567 AL354719.1-201ENST00000406535 843 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 GPM6BP2-201ENST00000432046 144 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 AC005019.1-201ENST00000436455 431 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 GPM6BP1-201ENST00000446387 144 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 WASF1P1-201ENST00000447560 1131 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 ANP32BP2-201ENST00000454525 545 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 RPL30P5-201ENST00000494923 336 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 AC117522.3-201ENST00000507974 584 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
NUP88Q99567 APOOP4-201ENST00000513530 597 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 SNORD60.2-201ENST00000516883 86 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.02□□□□□ -1.77
NUP88Q99567 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 AC106782.4-201ENST00000568264 210 ntBASIC4.02□□□□□ -1.77
NUP88Q99567 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC4.02□□□□□ -1.77
NUP88Q99567 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 123.8 ms