Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 RAB11AP2-201ENST00000545905 639 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL110115.1-201ENST00000614396 364 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AL354950.2-201ENST00000617939 290 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 MIR6130-201ENST00000619419 109 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC022140.2-201ENST00000623500 188 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS53Q5VIR6 AC007496.3-201ENST00000624987 3443 ntBASIC4.01□□□□□ -1.77
VPS53Q5VIR6 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
VPS53Q5VIR6 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
VPS53Q5VIR6 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4□□□□□ -1.77
VPS53Q5VIR6 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
VPS53Q5VIR6 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC4□□□□□ -1.77
VPS53Q5VIR6 RPL7P26-201ENST00000333817 754 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 MIR208A-201ENST00000362287 71 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 Y_RNA.263-201ENST00000364659 114 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 RNU6-996P-201ENST00000365438 107 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
VPS53Q5VIR6 MT-TD-201ENST00000387419 68 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC4□□□□□ -1.77
VPS53Q5VIR6 AL109755.1-201ENST00000401791 649 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 RNU6-1068P-201ENST00000410958 103 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC4□□□□□ -1.77
VPS53Q5VIR6 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4□□□□□ -1.77
VPS53Q5VIR6 RPL36AP53-201ENST00000432891 316 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC4□□□□□ -1.77
VPS53Q5VIR6 ELOCP23-201ENST00000452014 332 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC4□□□□□ -1.77
VPS53Q5VIR6 AC126389.1-201ENST00000477436 290 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC4□□□□□ -1.77
VPS53Q5VIR6 RPS4XP22-201ENST00000480755 780 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 RPL38P4-201ENST00000502376 214 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AC010486.1-201ENST00000511793 424 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4□□□□□ -1.77
VPS53Q5VIR6 RNU6-64P-201ENST00000517119 105 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4□□□□□ -1.77
VPS53Q5VIR6 AP001804.3-201ENST00000525146 880 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 DEFB108D-201ENST00000527787 222 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC4□□□□□ -1.77
VPS53Q5VIR6 AP002826.1-201ENST00000608835 315 ntBASIC4□□□□□ -1.77
VPS53Q5VIR6 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC4□□□□□ -1.77
VPS53Q5VIR6 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4□□□□□ -1.77
VPS53Q5VIR6 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL591416.1-201ENST00000404015 867 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL591034.1-201ENST00000407447 340 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 RNA5SP107-201ENST00000411358 122 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 YPEL5P1-201ENST00000419731 367 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 RPL31P12-201ENST00000422587 358 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 RPL27AP8-201ENST00000424277 446 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC024082.2-201ENST00000434771 238 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 RPL36AP6-201ENST00000435770 321 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 MTND3P22-201ENST00000510932 243 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC100870.1-201ENST00000522035 505 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 OR5B19P-201ENST00000531766 928 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 NCAPGP2-201ENST00000557911 754 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 MIR4293-201ENST00000584305 78 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC018638.8-201ENST00000588755 281 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL162713.1-201ENST00000604480 262 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC012468.1-201ENST00000604888 430 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL121992.2-201ENST00000606262 256 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL390240.1-201ENST00000612950 384 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC130324.3-201ENST00000614165 542 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL136313.1-201ENST00000624804 202 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC009812.4-201ENST00000569134 1805 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AC004972.1-201ENST00000623934 2209 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 AL021368.2-201ENST00000606125 5352 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 MTND5P17-201ENST00000418405 1603 ntBASIC3.99□□□□□ -1.77
VPS53Q5VIR6 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
VPS53Q5VIR6 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 PTMAP5-201ENST00000393073 333 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 RNU2-39P-201ENST00000410604 198 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 MTATP6P16-201ENST00000434543 526 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC005019.1-201ENST00000436455 431 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC073415.1-201ENST00000449240 153 ntBASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC3.98□□□□□ -1.77
VPS53Q5VIR6 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms