Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC4.56□□□□□ -1.68
SF3A1Q15459 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4.56□□□□□ -1.68
SF3A1Q15459 CBX3P1-201ENST00000325243 554 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 RNA5SP515-201ENST00000364570 118 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SF3A1Q15459 MIR888-201ENST00000401186 77 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 RPLP0P7-201ENST00000416050 667 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC4.56□□□□□ -1.68
SF3A1Q15459 ACTR3BP6-201ENST00000422332 1241 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AL353729.1-201ENST00000425044 720 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AL158071.1-201ENST00000430315 461 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 MYL8P-204ENST00000431574 518 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 HMGB1P37-201ENST00000439613 609 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AL078601.1-201ENST00000444542 271 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.56□□□□□ -1.68
SF3A1Q15459 SNORA19.2-201ENST00000516013 114 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AC090115.3-201ENST00000553218 849 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC4.56□□□□□ -1.68
SF3A1Q15459 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4.56□□□□□ -1.68
SF3A1Q15459 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 MIR4782-201ENST00000577987 79 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC4.56□□□□□ -1.68
SF3A1Q15459 BNIP3P25-201ENST00000596023 559 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SF3A1Q15459 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.56□□□□□ -1.68
SF3A1Q15459 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 AL031601.2-202ENST00000622650 282 ntBASIC4.56□□□□□ -1.68
SF3A1Q15459 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SF3A1Q15459 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SF3A1Q15459 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.56□□□□□ -1.68
SF3A1Q15459 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SF3A1Q15459 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SF3A1Q15459 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC007656.2-201ENST00000624902 4547 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 RNA5SP399-201ENST00000364003 117 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 SNORA70C-201ENST00000384538 135 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC022028.1-201ENST00000412054 408 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 RPL26P27-201ENST00000414397 437 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 RPL35AP12-201ENST00000425362 338 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 TOMM20P4-201ENST00000427861 435 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC4.55□□□□□ -1.68
SF3A1Q15459 HMGN2P20-201ENST00000437531 273 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 SNORA31.9-201ENST00000516429 84 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 Y_RNA.702-201ENST00000516843 96 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC243972.3-201ENST00000539655 198 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 VN1R85P-201ENST00000601587 426 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC103705.1-201ENST00000619013 241 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.55□□□□□ -1.68
SF3A1Q15459 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC4.55□□□□□ -1.68
SF3A1Q15459 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.55□□□□□ -1.68
SF3A1Q15459 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SF3A1Q15459 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.55□□□□□ -1.68
SF3A1Q15459 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SF3A1Q15459 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC4.55□□□□□ -1.68
SF3A1Q15459 UBE3AP2-201ENST00000429033 2259 ntBASIC4.55□□□□□ -1.68
SF3A1Q15459 AC005183.1-201ENST00000603687 1979 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
SF3A1Q15459 Y_RNA.279-201ENST00000364763 95 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 RNU6-867P-201ENST00000364956 107 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.54□□□□□ -1.68
SF3A1Q15459 RNU1-73P-201ENST00000383971 164 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 RNU6-767P-201ENST00000384132 107 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 Y_RNA.480-201ENST00000384364 102 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 Y_RNA.530-201ENST00000384587 101 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 SNORA40C-201ENST00000391285 128 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 EIF4E2P1-201ENST00000393781 255 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AL356057.2-201ENST00000403318 432 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 RNU6-1077P-201ENST00000410506 102 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 Y_RNA.623-201ENST00000411128 95 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC4.54□□□□□ -1.68
SF3A1Q15459 AL353621.1-201ENST00000418219 243 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC241644.2-201ENST00000426504 480 ntTSL 3 BASIC4.54□□□□□ -1.68
SF3A1Q15459 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.54□□□□□ -1.68
SF3A1Q15459 ATP5HP2-201ENST00000433885 485 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 TBCAP1-201ENST00000436520 327 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 BRK1P2-201ENST00000442875 223 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 MTND5P20-201ENST00000448677 143 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC010099.1-201ENST00000455434 375 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC092798.1-201ENST00000458542 409 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AP000852.1-201ENST00000472460 573 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 RPL21P13-201ENST00000488305 481 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC008628.2-201ENST00000502605 298 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.54□□□□□ -1.68
SF3A1Q15459 MIR892C-201ENST00000516410 77 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 MIR2116-201ENST00000517221 80 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 AC107953.1-201ENST00000522216 297 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 MIR4474-201ENST00000579189 78 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 LRRC37A5P-203ENST00000580181 585 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC4.54□□□□□ -1.68
SF3A1Q15459 MIR3941-201ENST00000582572 103 ntBASIC4.54□□□□□ -1.68
SF3A1Q15459 CTHRC1P1-201ENST00000605383 469 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms