Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AC022695.1-201ENST00000522089 237 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AP003730.1-201ENST00000524605 285 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AP000889.2-201ENST00000532684 490 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AC093027.1-201ENST00000546698 429 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AL355375.2-201ENST00000574825 175 ntBASIC3.31□□□□□ -1.88
SOX2P48431 MIR3690-201ENST00000580266 75 ntBASIC3.31□□□□□ -1.88
SOX2P48431 MIR3138-201ENST00000585238 82 ntBASIC3.31□□□□□ -1.88
SOX2P48431 MIR3942-201ENST00000585264 109 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AC068790.4-201ENST00000602474 263 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AL356055.1-201ENST00000602528 446 ntBASIC3.31□□□□□ -1.88
SOX2P48431 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC3.31□□□□□ -1.88
SOX2P48431 uc_338.15-201ENST00000615470 191 ntBASIC3.31□□□□□ -1.88
SOX2P48431 AL133216.2-202ENST00000634512 349 ntBASIC3.31□□□□□ -1.88
SOX2P48431 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SOX2P48431 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SOX2P48431 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.31□□□□□ -1.88
SOX2P48431 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
SOX2P48431 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SOX2P48431 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
SOX2P48431 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX2P48431 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX2P48431 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX2P48431 RNU4-79P-201ENST00000362764 141 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNU6-254P-201ENST00000363377 107 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNU6-371P-201ENST00000364283 108 ntBASIC3.3□□□□□ -1.88
SOX2P48431 Y_RNA.301-201ENST00000364990 103 ntBASIC3.3□□□□□ -1.88
SOX2P48431 SNORA4.3-201ENST00000365564 137 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNU6-741P-201ENST00000383889 107 ntBASIC3.3□□□□□ -1.88
SOX2P48431 MIR199A2-201ENST00000385289 110 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RPS4XP7-201ENST00000406274 780 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNA5SP129-201ENST00000410276 118 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RPL21P90-201ENST00000415692 466 ntBASIC3.3□□□□□ -1.88
SOX2P48431 MTND1P14-201ENST00000427400 950 ntBASIC3.3□□□□□ -1.88
SOX2P48431 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.3□□□□□ -1.88
SOX2P48431 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX2P48431 RPL21P104-201ENST00000464143 478 ntBASIC3.3□□□□□ -1.88
SOX2P48431 VN1R17P-201ENST00000472048 1090 ntBASIC3.3□□□□□ -1.88
SOX2P48431 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX2P48431 SNORA14.1-201ENST00000516113 141 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNU6-277P-201ENST00000516272 106 ntBASIC3.3□□□□□ -1.88
SOX2P48431 RNU6-273P-201ENST00000516937 96 ntBASIC3.3□□□□□ -1.88
SOX2P48431 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SOX2P48431 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX2P48431 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.3□□□□□ -1.88
SOX2P48431 MIR4700-201ENST00000578311 74 ntBASIC3.3□□□□□ -1.88
SOX2P48431 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX2P48431 MIR548AC-201ENST00000585049 88 ntBASIC3.3□□□□□ -1.88
SOX2P48431 AC008745.1-201ENST00000604064 271 ntBASIC3.3□□□□□ -1.88
SOX2P48431 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX2P48431 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC3.3□□□□□ -1.88
SOX2P48431 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC3.3□□□□□ -1.88
SOX2P48431 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX2P48431 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SOX2P48431 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX2P48431 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
SOX2P48431 AC006026.1-201ENST00000444025 1803 ntBASIC3.29□□□□□ -1.88
SOX2P48431 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX2P48431 Y_RNA.245-201ENST00000364493 95 ntBASIC3.29□□□□□ -1.88
SOX2P48431 RNA5SP97-201ENST00000365006 84 ntBASIC3.29□□□□□ -1.88
SOX2P48431 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SOX2P48431 Y_RNA.384-201ENST00000383909 102 ntBASIC3.29□□□□□ -1.88
SOX2P48431 PTMAP5-201ENST00000393073 333 ntBASIC3.29□□□□□ -1.88
SOX2P48431 RNU2-33P-201ENST00000410344 192 ntBASIC3.29□□□□□ -1.88
SOX2P48431 CRYBB2P1-203ENST00000415709 538 ntBASIC3.29□□□□□ -1.88
SOX2P48431 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX2P48431 AC002075.2-201ENST00000425207 252 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AC009237.8-201ENST00000445492 379 ntBASIC3.29□□□□□ -1.88
SOX2P48431 NUTF2P3-201ENST00000448540 384 ntBASIC3.29□□□□□ -1.88
SOX2P48431 RPS23P7-201ENST00000466210 444 ntBASIC3.29□□□□□ -1.88
SOX2P48431 SUMO2P6-201ENST00000505273 288 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AC009901.1-201ENST00000506703 541 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AC079140.5-201ENST00000507882 310 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.29□□□□□ -1.88
SOX2P48431 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 RNU6-256P-201ENST00000516747 97 ntBASIC3.29□□□□□ -1.88
SOX2P48431 RNA5SP290-201ENST00000517133 127 ntBASIC3.29□□□□□ -1.88
SOX2P48431 RNU6-1315P-201ENST00000517187 99 ntBASIC3.29□□□□□ -1.88
SOX2P48431 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AC009643.1-201ENST00000532030 391 ntBASIC3.29□□□□□ -1.88
SOX2P48431 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.29□□□□□ -1.88
SOX2P48431 APAF1-207ENST00000547743 651 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.29□□□□□ -1.88
SOX2P48431 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC3.29□□□□□ -1.88
SOX2P48431 KLKP1-201ENST00000595979 403 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AC012119.1-201ENST00000603184 222 ntBASIC3.29□□□□□ -1.88
SOX2P48431 AL445567.2-201ENST00000618935 498 ntBASIC3.29□□□□□ -1.88
SOX2P48431 MTND1P37-201ENST00000636562 264 ntBASIC3.29□□□□□ -1.88
SOX2P48431 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
SOX2P48431 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SOX2P48431 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
SOX2P48431 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
SOX2P48431 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC3.28□□□□□ -1.88
SOX2P48431 RNU6-283P-201ENST00000364788 107 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms