Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNA5SP154-201ENST00000516193 111 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC008739.3-201ENST00000603262 127 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AC008638.3-201ENST00000603341 463 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 APOOP1-201ENST00000604695 592 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD3P31249 AC015813.4-201ENST00000610469 179 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 U2.17-201ENST00000611454 95 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD3P31249 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD3P31249 AP001148.1-201ENST00000624124 2359 ntBASIC3.1□□□□□ -1.91
HOXD3P31249 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
HOXD3P31249 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXD3P31249 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 AC116096.1-201ENST00000566804 2314 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.91
HOXD3P31249 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 DEFB108F-201ENST00000344638 222 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Y_RNA.132-201ENST00000363421 102 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Y_RNA.259-201ENST00000364619 101 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Y_RNA.384-201ENST00000383909 102 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Y_RNA.387-201ENST00000383918 102 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 RNU6-1013P-201ENST00000384180 107 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 RNU6-434P-201ENST00000384376 107 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Y_RNA.534-201ENST00000384599 112 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 MIR548K-201ENST00000408406 116 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 MIR1251-201ENST00000408552 70 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AL513331.1-201ENST00000411908 397 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AL160275.2-201ENST00000412010 394 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD3P31249 AC004552.1-201ENST00000419089 348 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD3P31249 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 RPL21P41-201ENST00000459863 264 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 RPL21P104-201ENST00000464143 478 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC104472.2-201ENST00000469035 601 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 RPS26P3-201ENST00000470205 348 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 OARD1-209ENST00000471367 401 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXD3P31249 AC090543.2-201ENST00000483963 348 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC004057.1-201ENST00000485827 348 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD3P31249 UBE2CP3-201ENST00000502715 450 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD3P31249 RNU6-927P-201ENST00000516199 100 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 SNORA31.8-201ENST00000516327 108 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 RNU6-1256P-201ENST00000516539 103 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD3P31249 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD3P31249 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD3P31249 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD3P31249 MIR5692C1-201ENST00000585309 91 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC098826.3-201ENST00000603823 466 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC110741.2-201ENST00000605278 268 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC069200.1-201ENST00000609511 323 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AL121772.2-201ENST00000614331 297 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AL354798.1-201ENST00000622505 329 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD3P31249 MTND1P37-201ENST00000636562 264 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 Z99571.1-201ENST00000636677 394 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 AC012442.3-202ENST00000636742 206 ntBASIC3.09□□□□□ -1.91
HOXD3P31249 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD3P31249 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD3P31249 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.09□□□□□ -1.92
HOXD3P31249 MTND4P23-201ENST00000447723 1363 ntBASIC3.09□□□□□ -1.92
HOXD3P31249 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
HOXD3P31249 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.09□□□□□ -1.92
HOXD3P31249 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.09□□□□□ -1.92
HOXD3P31249 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
HOXD3P31249 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC3.08□□□□□ -1.92
HOXD3P31249 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC3.08□□□□□ -1.92
HOXD3P31249 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.08□□□□□ -1.92
HOXD3P31249 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 RNA5SP52-201ENST00000362448 134 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.08□□□□□ -1.92
HOXD3P31249 Y_RNA.399-201ENST00000383955 105 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 RNU6-45P-201ENST00000384471 107 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 SNORD116-29-201ENST00000384516 83 ntBASIC3.08□□□□□ -1.92
HOXD3P31249 MIR578-201ENST00000384828 96 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms