Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 AP002748.2-201ENST00000528671 348 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AP000867.2-201ENST00000532468 320 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC4P09017 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC2.47□□□□□ -2.01
HOXC4P09017 AC123904.3-201ENST00000547218 814 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC4P09017 AC091489.2-201ENST00000566263 604 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 MIR4637-201ENST00000582405 84 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AP001004.1-201ENST00000582468 324 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 MIR4435-1-201ENST00000582552 80 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AP000403.1-201ENST00000603349 851 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AC019159.1-201ENST00000605094 187 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.47□□□□□ -2.01
HOXC4P09017 RNU6-88P-201ENST00000606801 100 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 AC097468.3-201ENST00000607956 456 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 Z99129.1-201ENST00000612510 255 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC2.47□□□□□ -2.01
HOXC4P09017 AC010297.1-201ENST00000623948 149 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 CRYM-AS1-204ENST00000637983 556 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 MTND4P4-201ENST00000439033 1366 ntBASIC2.47□□□□□ -2.01
HOXC4P09017 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC4P09017 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC4P09017 AL022578.1-201ENST00000439330 1433 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.46□□□□□ -2.02
HOXC4P09017 RNU5F-7P-201ENST00000363696 115 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 RNA5SP126-201ENST00000365092 109 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.46□□□□□ -2.02
HOXC4P09017 RNU2-16P-201ENST00000410712 136 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AL663109.1-201ENST00000411498 844 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC4P09017 LINC00392-201ENST00000430033 557 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC4P09017 AL022238.1-201ENST00000442557 355 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC2.46□□□□□ -2.02
HOXC4P09017 MTCO1P27-201ENST00000448269 226 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 CACYBPP2-201ENST00000453625 678 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC092798.1-201ENST00000458542 409 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 HMGB1P36-201ENST00000487709 576 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 RPL30P5-201ENST00000494923 336 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AF131216.2-201ENST00000512316 564 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC4P09017 AL117351.2-201ENST00000513571 157 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 AC022483.1-201ENST00000514020 567 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 HSPA8P13-201ENST00000523715 472 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 MTCYBP20-201ENST00000524239 1129 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC013828.2-201ENST00000532487 235 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 OR5BN1P-201ENST00000532955 829 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 MAL2-203ENST00000534619 578 ntTSL 4 BASIC2.46□□□□□ -2.02
HOXC4P09017 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC4P09017 HMGB1P14-201ENST00000557424 591 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 HSPE1P3-201ENST00000559254 309 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC027176.1-201ENST00000560204 514 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC2.46□□□□□ -2.02
HOXC4P09017 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC2.46□□□□□ -2.02
HOXC4P09017 MIR544B-201ENST00000582372 78 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC105224.1-201ENST00000587055 421 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC087683.1-201ENST00000591187 441 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 AC098614.4-201ENST00000607601 462 ntBASIC2.46□□□□□ -2.02
HOXC4P09017 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXC4P09017 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.45□□□□□ -2.02
HOXC4P09017 FRG1BP-201ENST00000278882 761 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 FGF7P2-201ENST00000332473 296 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 RNU6-301P-201ENST00000384277 107 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 RNU6-297P-201ENST00000384636 107 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 AC083875.1-201ENST00000419509 405 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AL136322.1-201ENST00000422250 548 ntTSL 4 BASIC2.45□□□□□ -2.02
HOXC4P09017 HMGN2P30-201ENST00000423237 256 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AC104651.1-201ENST00000427559 735 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 MTND5P14-201ENST00000441481 1267 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
HOXC4P09017 SNRPGP6-201ENST00000451124 220 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AC010099.1-201ENST00000455434 375 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 BX322784.1-201ENST00000455793 1077 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 RNA5SP269-201ENST00000459032 137 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AP000797.1-201ENST00000478870 387 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
HOXC4P09017 AC009901.1-201ENST00000506703 541 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 RNU6-720P-201ENST00000516363 108 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.45□□□□□ -2.02
HOXC4P09017 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC2.45□□□□□ -2.02
HOXC4P09017 AC010546.1-201ENST00000569391 485 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 BNIP3P23-201ENST00000599655 511 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 RPL23AP78-201ENST00000599928 470 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AC104010.1-201ENST00000616889 150 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AL590808.1-201ENST00000618696 141 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.45□□□□□ -2.02
HOXC4P09017 TEX21P-201ENST00000447107 1476 ntBASIC2.45□□□□□ -2.02
HOXC4P09017 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
HOXC4P09017 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.44□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms