Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPS15AP12-201ENST00000419498 388 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXD4P09016 RPL27AP8-201ENST00000424277 446 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 C8orf59P1-201ENST00000429930 303 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD4P09016 AC234775.1-201ENST00000454247 670 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 MTND1P12-201ENST00000455231 147 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD4P09016 RPL9P6-201ENST00000492764 598 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC108078.1-201ENST00000508073 725 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXD4P09016 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
HOXD4P09016 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD4P09016 AL133153.1-201ENST00000557756 303 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC2.75□□□□□ -1.97
HOXD4P09016 AC107304.1-201ENST00000604229 296 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC008962.1-201ENST00000605729 304 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC004908.2-201ENST00000609090 574 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC009570.1-201ENST00000609599 745 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC245517.5-201ENST00000611529 162 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC090970.3-201ENST00000612566 866 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AL133173.2-201ENST00000614270 90 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 uc_338.12-201ENST00000616344 181 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD4P09016 AC068137.3-201ENST00000639191 341 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 AC073869.6-201ENST00000640656 341 ntBASIC2.75□□□□□ -1.97
HOXD4P09016 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXD4P09016 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXD4P09016 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC2.74□□□□□ -1.97
HOXD4P09016 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
HOXD4P09016 Y_RNA.6-201ENST00000362350 114 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 Y_RNA.296-201ENST00000364930 108 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 U3.42-201ENST00000408746 214 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 RNU2-8P-201ENST00000410727 190 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 RNU6-516P-201ENST00000411381 104 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 CCDC58P2-201ENST00000417131 366 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC119618.1-201ENST00000434191 222 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD4P09016 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD4P09016 AL359385.1-201ENST00000456509 365 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD4P09016 KC877373.1-201ENST00000479066 408 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC135721.1-201ENST00000497954 479 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 VN1R104P-201ENST00000505115 1009 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.74□□□□□ -1.97
HOXD4P09016 ARL4AP2-201ENST00000507378 601 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC022483.1-201ENST00000514020 567 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 Vault.3-201ENST00000516676 95 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 SNORD59.2-201ENST00000516873 68 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 RNA5SP337-201ENST00000517007 109 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXD4P09016 AP000857.1-201ENST00000532151 543 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXD4P09016 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD4P09016 MIR3124-201ENST00000582636 67 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC023043.3-201ENST00000593113 385 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXD4P09016 KC877982.1-201ENST00000602313 470 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AP003465.2-201ENST00000602571 373 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC245014.2-201ENST00000603689 287 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 AC246785.4-201ENST00000605374 287 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC2.74□□□□□ -1.97
HOXD4P09016 AC006111.3-201ENST00000622137 383 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 OR5H6-203ENST00000642105 978 ntBASIC2.74□□□□□ -1.97
HOXD4P09016 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
HOXD4P09016 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC096644.4-201ENST00000563417 2912 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXD4P09016 RNU6-282P-201ENST00000365357 103 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 RNY3P13-201ENST00000365542 102 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 RNU6-637P-201ENST00000384050 107 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXD4P09016 GSTA9P-201ENST00000406231 611 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 RPS3AP24-201ENST00000407896 734 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 MTND1P21-201ENST00000412991 285 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 EEF1A1P41-201ENST00000414667 207 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 PIGFP2-201ENST00000421400 651 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AL451074.3-201ENST00000437709 472 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 USP9YP15-201ENST00000442391 422 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXD4P09016 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXD4P09016 C1DP4-201ENST00000455429 424 ntBASIC2.73□□□□□ -1.97
HOXD4P09016 AC093899.1-201ENST00000457984 376 ntBASIC2.73□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms