Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HMGB1P18-201ENST00000438801 619 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 NOTCH2P1-201ENST00000443481 624 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 RANP8-201ENST00000444720 713 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 RPL21P11-201ENST00000461458 483 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC092451.1-201ENST00000480211 153 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4BO75351 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4BO75351 RNU6-864P-201ENST00000516256 108 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 RNU6-1038P-201ENST00000516516 104 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.78□□□□□ -1.8
VPS4BO75351 AP001804.3-201ENST00000525146 880 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 SNRPGP16-201ENST00000533275 226 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 MED28P6-201ENST00000558776 231 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC3.78□□□□□ -1.8
VPS4BO75351 MIR3921-201ENST00000577308 85 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 MIR4795-201ENST00000584182 89 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 CTHRC1P1-201ENST00000605383 469 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 BRDTP1-201ENST00000605735 677 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 MIR6868-201ENST00000611215 58 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC012531.5-201ENST00000611375 151 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 AL121772.2-201ENST00000614331 297 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AP003400.5-201ENST00000624827 617 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 AC006026.1-201ENST00000444025 1803 ntBASIC3.78□□□□□ -1.8
VPS4BO75351 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.78□□□□□ -1.8
VPS4BO75351 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
VPS4BO75351 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 RNU5A-1-201ENST00000362698 116 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 SNORD6-201ENST00000365444 73 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 RNU6-116P-201ENST00000384042 109 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 RNU6-1181P-201ENST00000384191 106 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 MIR514A1-201ENST00000385133 98 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 POLHP1-201ENST00000411806 470 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 NDUFB4P5-201ENST00000415445 361 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 AL669831.1-202ENST00000428504 417 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 GTF2IP13-201ENST00000438487 386 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 TXNP1-201ENST00000441872 371 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 PRDX3P3-201ENST00000447765 522 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 FABP5P13-201ENST00000452144 328 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 HMGN2P7-201ENST00000456186 273 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 AC012181.1-201ENST00000479895 423 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AP001086.1-201ENST00000494882 321 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4BO75351 AC090136.1-201ENST00000520009 240 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 AC090115.3-201ENST00000553218 849 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC3.77□□□□□ -1.81
VPS4BO75351 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC3.77□□□□□ -1.81
VPS4BO75351 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4BO75351 AL592436.1-201ENST00000605135 558 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AC022893.3-201ENST00000607665 437 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 Z82243.1-201ENST00000609432 473 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
VPS4BO75351 AC135507.2-201ENST00000612443 309 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.77□□□□□ -1.81
VPS4BO75351 HSPA8P4-201ENST00000511877 1920 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AC116096.1-201ENST00000566804 2314 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 AC073346.2-201ENST00000624724 2058 ntBASIC3.77□□□□□ -1.81
VPS4BO75351 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
VPS4BO75351 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 RNA5SP124-201ENST00000362739 110 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 RNA5SP72-201ENST00000364442 117 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 Y_RNA.534-201ENST00000384599 112 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 SNORA16.2-201ENST00000390991 127 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 RPS12P24-201ENST00000412619 387 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AC080125.1-201ENST00000414888 684 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4BO75351 RPL21P109-201ENST00000422213 475 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 NDUFB4P7-201ENST00000423198 363 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AC017083.1-201ENST00000428093 483 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4BO75351 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4BO75351 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.76□□□□□ -1.81
VPS4BO75351 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VPS4BO75351 CEACAMP4-201ENST00000457676 421 ntBASIC3.76□□□□□ -1.81
VPS4BO75351 AC004801.2-202ENST00000463559 283 ntBASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms