Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.04□□□□□ -1.92
LMX1BO60663 AL365440.1-201ENST00000436135 2167 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 RNU6-1155P-201ENST00000363554 107 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 Y_RNA.184-201ENST00000363884 108 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RNU6-61P-201ENST00000365528 109 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 RNU6-1029P-201ENST00000384109 107 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 Y_RNA.474-201ENST00000384341 102 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 SNORA24.1-201ENST00000384401 135 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RNU6-831P-201ENST00000384548 107 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 MIR490-201ENST00000384865 128 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
LMX1BO60663 AL109755.1-201ENST00000401791 649 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AL583834.1-201ENST00000406943 343 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RN7SKP32-201ENST00000410167 303 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RPS20P15-201ENST00000412792 311 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AL159169.1-201ENST00000421119 127 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 RPL35AP12-201ENST00000425362 338 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 ATP5JP1-201ENST00000431631 322 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RPL29P29-201ENST00000448725 423 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RNU7-182P-201ENST00000459009 62 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 RNU6-329P-201ENST00000459618 107 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC103851.1-201ENST00000506833 274 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC3.04□□□□□ -1.92
LMX1BO60663 Y_RNA.665-201ENST00000516177 98 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 Y_RNA.701-201ENST00000516812 110 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC100870.1-201ENST00000522035 505 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC007458.1-201ENST00000542812 373 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC125611.2-201ENST00000551907 647 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 MIR4703-201ENST00000577728 79 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 MIR4742-201ENST00000581069 85 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.04□□□□□ -1.92
LMX1BO60663 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.04□□□□□ -1.92
LMX1BO60663 AC103710.3-201ENST00000608157 948 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 MIR8058-201ENST00000615737 89 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 SCARNA15.3-201ENST00000626315 122 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 SCARNA4.1-201ENST00000628597 123 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.04□□□□□ -1.92
LMX1BO60663 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.04□□□□□ -1.92
LMX1BO60663 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.04□□□□□ -1.92
LMX1BO60663 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.04□□□□□ -1.92
LMX1BO60663 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LMX1BO60663 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LMX1BO60663 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
LMX1BO60663 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.03□□□□□ -1.92
LMX1BO60663 AL513302.2-201ENST00000562313 1842 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 USP8P1-201ENST00000494673 3183 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AL049781.1-201ENST00000623195 3585 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.03□□□□□ -1.92
LMX1BO60663 Y_RNA.58-201ENST00000362807 102 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 Y_RNA.154-201ENST00000363624 102 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 SNORA38.1-201ENST00000364172 131 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 SNORA51.2-201ENST00000364595 132 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNY3P1-201ENST00000365085 102 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 SNORD115-7-201ENST00000365306 82 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNY3-201ENST00000365484 102 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU6-641P-201ENST00000384006 107 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU6-432P-201ENST00000384196 109 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 Y_RNA.490-201ENST00000384413 102 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 U3.19-201ENST00000390893 196 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU6-55P-201ENST00000411092 107 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU6-954P-201ENST00000411355 107 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC096664.2-201ENST00000411843 406 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 MTND3P8-201ENST00000412909 339 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 BEND7P1-201ENST00000422058 457 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 CYCSP4-201ENST00000429682 331 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 ERLEC1P1-201ENST00000433806 578 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 BX679664.1-201ENST00000434429 253 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.03□□□□□ -1.92
LMX1BO60663 IFNA20P-201ENST00000436840 528 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC007677.1-201ENST00000445757 515 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RPL7P12-201ENST00000446719 750 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 CEACAMP4-201ENST00000457676 421 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RPS4XP2-201ENST00000458402 793 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU7-170P-201ENST00000459303 61 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RPL7P47-201ENST00000497299 556 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 CCDC34P1-201ENST00000507441 517 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 RNU4-29P-201ENST00000515943 174 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 RNU4-49P-201ENST00000516080 140 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 Y_RNA.675-201ENST00000516389 149 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 BTF3P12-201ENST00000519620 469 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 OR5AL2P-201ENST00000532185 920 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC087241.2-201ENST00000535801 324 ntBASIC3.03□□□□□ -1.92
LMX1BO60663 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.03□□□□□ -1.92
LMX1BO60663 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.03□□□□□ -1.92
LMX1BO60663 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.03□□□□□ -1.92
LMX1BO60663 MIR5583-1-201ENST00000580941 59 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms