Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 SNORA36C-201ENST00000384289 132 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC108059.2-201ENST00000434626 151 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 TBCAP1-201ENST00000436520 327 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 RPL12P25-201ENST00000455592 494 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC128713.1-201ENST00000471495 306 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC012158.1-204ENST00000483430 465 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 RPS15AP34-201ENST00000487776 387 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC108145.1-201ENST00000503770 153 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC116655.1-201ENST00000508324 901 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC113167.1-201ENST00000512941 570 ntTSL 4 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 RNU6-927P-201ENST00000516199 100 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 RNU6-914P-201ENST00000516749 109 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC008269.2-201ENST00000561915 1105 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC005014.2-201ENST00000607795 599 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC096577.2-201ENST00000611455 153 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC009093.8-201ENST00000641769 292 ntBASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC5.26□□□□□ -1.57
CCDC87Q9NVE4 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC126323.6-202ENST00000568092 3511 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 RNU6-1074P-201ENST00000383995 104 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 SNORA41-201ENST00000384675 132 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 MIR568-201ENST00000385036 95 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 RPL21P90-201ENST00000415692 466 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC008267.5-201ENST00000424928 265 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC087588.1-201ENST00000462203 316 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AL591473.1-201ENST00000464297 313 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC108022.1-201ENST00000493466 478 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 RNU6-264P-201ENST00000517134 104 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 SNORD116.3-201ENST00000517176 78 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC026403.1-201ENST00000518938 295 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC011494.1-201ENST00000596454 237 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 AC002044.1-201ENST00000606707 158 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 U4.1-201ENST00000620349 87 ntBASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
CCDC87Q9NVE4 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 NEAT1-202ENST00000501122 22743 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC005183.1-201ENST00000603687 1979 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.534-201ENST00000384599 112 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 SNORA57.3-201ENST00000411095 141 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC097713.2-201ENST00000430199 356 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 RPL26P6-201ENST00000440913 438 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC092436.3-201ENST00000511788 257 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 RNU6-699P-201ENST00000517081 110 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC087369.1-201ENST00000520775 996 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 RPL23AP87-202ENST00000573039 466 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 MIR3668-201ENST00000582138 75 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 MIR548AC-201ENST00000585049 88 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 MIR5684-201ENST00000585074 65 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 SNORD91B-202ENST00000608459 222 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 MIR6868-201ENST00000611215 58 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AC015967.1-201ENST00000619893 476 ntBASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC5.24□□□□□ -1.57
CCDC87Q9NVE4 AL356489.2-201ENST00000566968 3528 ntBASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
CCDC87Q9NVE4 Y_RNA.176-201ENST00000363815 109 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms