Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 APOOP4-201ENST00000513530 597 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 RN7SKP18-201ENST00000516005 275 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 Y_RNA.675-201ENST00000516389 149 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 RNU6-1256P-201ENST00000516539 103 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 RNU6-914P-201ENST00000516749 109 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 RNA5SP471-201ENST00000516971 106 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 MIR4795-201ENST00000584182 89 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC244505.7-201ENST00000599675 272 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 Z82243.1-201ENST00000609432 473 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC090132.2-201ENST00000615881 347 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 AC103705.1-201ENST00000619013 241 ntBASIC3.92□□□□□ -1.78
TDP1Q9NUW8 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.92□□□□□ -1.78
TDP1Q9NUW8 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 ZNF962P-201ENST00000443465 3140 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 SNORA31-201ENST00000362607 130 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RNA5SP51-201ENST00000364750 119 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RNU6-393P-201ENST00000384475 107 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 Y_RNA.534-201ENST00000384599 112 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 MIR23A-201ENST00000385245 73 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RNA5SP219-201ENST00000390940 113 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 MIR1290-201ENST00000408735 78 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 Z85995.1-201ENST00000415547 335 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC004552.1-201ENST00000419089 348 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 VDAC1P3-201ENST00000434069 851 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AF228730.2-201ENST00000438784 848 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 HMGB1P18-201ENST00000438801 619 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 DYNLL1P5-201ENST00000467158 270 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RPS26P3-201ENST00000470205 348 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RPL7P5-201ENST00000471472 736 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC012181.1-201ENST00000479895 423 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC090543.2-201ENST00000483963 348 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC004057.1-201ENST00000485827 348 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 RNU6-189P-201ENST00000516120 101 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AP000763.2-201ENST00000540641 163 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC093027.1-201ENST00000546698 429 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC004024.1-201ENST00000549244 247 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 AL356055.1-201ENST00000602528 446 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 U3.45-201ENST00000607547 219 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 uc_338.32-201ENST00000615087 172 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC3.91□□□□□ -1.78
TDP1Q9NUW8 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
TDP1Q9NUW8 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
TDP1Q9NUW8 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 SNORD74.4-201ENST00000364129 80 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RNU6-512P-201ENST00000364438 103 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.333-201ENST00000365274 102 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 Y_RNA.399-201ENST00000383955 105 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RPS3AP46-201ENST00000448352 682 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RPL31P60-201ENST00000478450 367 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RPL31P61-201ENST00000496160 376 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC110768.1-201ENST00000509222 400 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 HIGD1AP13-201ENST00000509878 289 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC114316.1-201ENST00000511323 278 ntTSL 5 BASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RNU2-69P-201ENST00000516061 100 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 RNU6-864P-201ENST00000516256 108 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC090136.1-201ENST00000520009 240 ntBASIC3.9□□□□□ -1.79
TDP1Q9NUW8 AC090115.3-201ENST00000553218 849 ntBASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms