Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AL161734.1-201ENST00000609720 557 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AP000254.1-201ENST00000609934 520 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC138749.5-201ENST00000611461 208 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AL133173.2-201ENST00000614270 90 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC116165.2-201ENST00000616705 206 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC068831.7-201ENST00000616954 363 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC002076.2-201ENST00000617362 122 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 SNHG22-203ENST00000617833 660 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 AC241585.2-209ENST00000638217 143 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 SDAD1P2-201ENST00000441308 2028 ntBASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.24□□□□□ -1.89
ZNF541Q9H0D2 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RN7SKP223-201ENST00000410582 62 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RNU4-53P-201ENST00000410828 140 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RPS3AP3-201ENST00000411933 242 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RPL7P10-201ENST00000417407 739 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AL589872.1-201ENST00000426602 288 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AL591806.2-201ENST00000433122 173 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RPL37P6-201ENST00000460682 294 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC012181.1-201ENST00000479895 423 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC010424.1-201ENST00000506336 297 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 MTND4P2-201ENST00000507767 1203 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC105313.1-201ENST00000509121 353 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 Y_RNA.672-201ENST00000516289 104 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 RNU6-1256P-201ENST00000516539 103 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC068657.1-201ENST00000520807 306 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC107934.1-201ENST00000522215 217 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC007115.1-201ENST00000546853 234 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC128657.1-201ENST00000549459 145 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC015712.3-201ENST00000559380 164 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC006362.1-201ENST00000567392 174 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 HMGN1P30-201ENST00000589286 268 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 CEP164P1-207ENST00000608660 504 ntTSL 5 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC099778.2-201ENST00000610904 211 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC025594.3-201ENST00000613068 790 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC013476.2-201ENST00000614456 459 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 AC091953.2-201ENST00000623979 160 ntBASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
ZNF541Q9H0D2 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 BTF3L4P3-201ENST00000418879 476 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC007919.1-201ENST00000429380 217 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 ARPC3P1-201ENST00000437218 533 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AL513043.1-201ENST00000439124 535 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 TAF9P1-201ENST00000445421 515 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC009237.8-201ENST00000445492 379 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 TAF9P2-201ENST00000454958 515 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 RPS27P29-201ENST00000463110 252 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC003982.1-202ENST00000469928 248 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 LARP1BP2-201ENST00000486594 519 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 RNA5SP291-201ENST00000517222 105 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 MAL2-206ENST00000522187 547 ntTSL 4 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 IGHV3-76-201ENST00000522465 295 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC124947.2-202ENST00000552735 133 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 ZNF861P-201ENST00000588126 639 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC087752.4-201ENST00000605911 462 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC108747.1-201ENST00000609508 535 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AL390240.1-201ENST00000612950 384 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AP001506.1-201ENST00000615444 211 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC048344.4-201ENST00000619744 527 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC090582.1-201ENST00000636321 199 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AP006437.1-201ENST00000641440 3685 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AL021368.2-201ENST00000606125 5352 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC090740.1-201ENST00000623193 2262 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC002546.1-201ENST00000588041 2504 ntBASIC3.22□□□□□ -1.89
ZNF541Q9H0D2 AC245054.2-201ENST00000415639 319 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 ELOCP4-201ENST00000420090 333 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 ISCA1P6-201ENST00000427740 390 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AL139415.2-201ENST00000431968 163 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 MTND4P32-201ENST00000437189 1237 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AC005094.1-201ENST00000440420 368 ntBASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.21□□□□□ -1.89
ZNF541Q9H0D2 AL122001.1-201ENST00000457027 370 ntBASIC3.21□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms