Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AP001148.1-201ENST00000624124 2359 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 SNORA63-201ENST00000363450 132 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 Y_RNA.151-201ENST00000363566 112 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RNU6-1188P-201ENST00000363795 107 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 SNORA71.2-201ENST00000364941 134 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 Y_RNA.579-201ENST00000390939 94 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 SNORA75.4-201ENST00000391278 119 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RNA5SP38-201ENST00000410750 119 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AC092017.2-201ENST00000427600 362 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AL159987.2-201ENST00000432754 307 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 HMGN2P20-201ENST00000437531 273 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RPS26P2-201ENST00000440331 348 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AP002884.2-201ENST00000471647 395 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RPL23AP49-201ENST00000492925 468 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RPS27AP10-201ENST00000496103 208 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 ACA59.1-201ENST00000515966 143 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 AC018462.2-201ENST00000605375 395 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 RAD17P1-201ENST00000418130 2042 ntBASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
TRAIPQ9BWF2 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 KPNA2P1-201ENST00000458289 1591 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 SCN1A-220ENST00000641603 12506 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC021146.4-201ENST00000309229 279 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RPL9P7-201ENST00000330965 580 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RNU6-527P-201ENST00000363425 104 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RNU6-1280P-201ENST00000365211 107 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 EIF4EBP2P3-201ENST00000403144 334 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC005534.2-201ENST00000431047 433 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AL513043.1-201ENST00000439124 535 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 DAP3P1-201ENST00000441522 278 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC125238.1-201ENST00000448842 249 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RPL9P9-202ENST00000466501 579 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC008571.1-201ENST00000467232 300 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RN7SL812P-201ENST00000493791 279 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AC134698.5-201ENST00000519444 336 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AL451007.1-201ENST00000595491 289 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 MIR6758-201ENST00000620653 63 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 AL669831.3-213ENST00000636676 183 ntBASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.05□□□□□ -1.6
TRAIPQ9BWF2 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 MTND5P10-201ENST00000603719 1809 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 Y_RNA.187-201ENST00000363918 113 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RNU6-198P-201ENST00000384258 104 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 SNORD116-29-201ENST00000384516 83 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RNU6-328P-201ENST00000390887 106 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RNU6-325P-201ENST00000411132 105 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC236972.1-201ENST00000433225 199 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 NIPA2P5-201ENST00000452282 464 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC027575.1-201ENST00000481064 460 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RPS29P20-201ENST00000489592 171 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 RN7SKP122-201ENST00000515923 296 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC009314.1-201ENST00000603871 304 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AL627309.6-201ENST00000606857 840 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC009229.3-201ENST00000608056 282 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AP005019.3-201ENST00000620418 560 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 AC110491.1-201ENST00000562191 2010 ntBASIC5.04□□□□□ -1.6
TRAIPQ9BWF2 MAPK10-320ENST00000641462 6696 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms