Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 NDUFS5P1-201ENST00000405668 289 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AL354733.1-203ENST00000417672 495 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC104651.1-201ENST00000427559 735 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 RPL36AP53-201ENST00000432891 316 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 TIMM9P1-201ENST00000436122 256 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC098831.1-201ENST00000440661 216 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC104389.3-201ENST00000445629 235 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 CACYBPP2-201ENST00000453625 678 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 MTCO1P42-201ENST00000457379 726 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AIG1P1-201ENST00000503376 148 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 SCARNA11.3-201ENST00000517276 130 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 MIR3162-201ENST00000581818 82 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 BX664608.1-201ENST00000610519 487 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 MIR6817-201ENST00000615588 66 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AL031667.3-201ENST00000620124 655 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 MIR3199-2-201ENST00000636243 86 ntBASIC2.86□□□□□ -1.95
CCDC43Q96MW1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
CCDC43Q96MW1 AC135776.4-201ENST00000624300 1904 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC004520.1-201ENST00000608362 1413 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 Y_RNA.18-201ENST00000362461 102 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 DEFA7P-201ENST00000382676 285 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 RNU6-701P-201ENST00000384059 107 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 ISCA1P1-201ENST00000426679 387 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 OSTCP8-201ENST00000445117 448 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 FABP5P15-201ENST00000453566 214 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL441989.1-201ENST00000454204 382 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 SNORA59A-201ENST00000459326 152 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 UBE2DNL-203ENST00000474922 222 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC126389.1-201ENST00000477436 290 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC098799.2-201ENST00000509466 868 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 RNU5F-8P-201ENST00000515941 111 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 SNORA31.3-201ENST00000516029 96 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 SNORA31.18-201ENST00000517043 134 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 HMGB1P41-201ENST00000520234 440 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 CD44-AS1-201ENST00000528869 587 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC243972.3-201ENST00000539655 198 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC023050.2-201ENST00000544968 387 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC090888.2-201ENST00000559765 1144 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC234778.2-201ENST00000566241 354 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AGGF1P5-201ENST00000567900 919 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL356432.3-201ENST00000568952 465 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL354943.1-201ENST00000572103 781 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC027449.1-201ENST00000608890 407 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 TUSC7.1-201ENST00000610969 165 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 DUSP12P1-201ENST00000612874 516 ntBASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC2.85□□□□□ -1.95
CCDC43Q96MW1 AL359693.1-201ENST00000614959 2407 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 Y_RNA.46-201ENST00000362695 102 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AL021407.1-201ENST00000404531 386 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 RPL26P27-201ENST00000414397 437 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC080125.1-201ENST00000414888 684 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC096649.2-201ENST00000416186 393 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 HMGB1P9-201ENST00000429856 646 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 HMGB1P27-201ENST00000431429 603 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AL121769.1-201ENST00000469473 401 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC090096.1-201ENST00000489168 390 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC114781.4-201ENST00000513707 639 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 CKS1BP7-201ENST00000522230 235 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AP006587.4-201ENST00000526053 529 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC044798.1-201ENST00000565146 418 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC007151.1-201ENST00000572774 483 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 MIR5092-201ENST00000583139 88 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC005261.5-201ENST00000596280 355 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 KC877982.1-201ENST00000602313 470 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AL356280.1-201ENST00000603614 379 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AC007621.1-201ENST00000604544 437 ntBASIC2.84□□□□□ -1.95
CCDC43Q96MW1 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC2.84□□□□□ -1.95
CCDC43Q96MW1 AL391813.2-201ENST00000609113 322 ntBASIC2.84□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms