Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC243964.1-201ENST00000441814 261 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 snoU13.28-201ENST00000459235 104 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC073073.1-201ENST00000493920 463 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 RNU6-1271P-201ENST00000517049 105 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC093799.2-201ENST00000610062 578 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 LINC00901.1-201ENST00000617252 152 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 MIR6134-201ENST00000617606 109 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC233981.2-201ENST00000611524 1614 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC000123.3-201ENST00000624029 4975 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AP001642.1-201ENST00000624727 2117 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.214-201ENST00000364201 112 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 SNORA58B-201ENST00000364259 136 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 RNU4-50P-201ENST00000364361 141 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 RNU1-100P-201ENST00000365255 165 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.556-201ENST00000384677 113 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 MIR765-201ENST00000390226 114 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AP000580.1-201ENST00000404439 358 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 RNU6ATAC7P-201ENST00000408111 127 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 ELOCP20-201ENST00000422460 345 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC108059.2-201ENST00000434626 151 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 Z82188.1-201ENST00000436709 154 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AL031659.1-201ENST00000447075 539 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 RNU6-513P-201ENST00000516104 104 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC011602.1-201ENST00000546484 331 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 MIR3609-201ENST00000582661 80 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC060766.3-201ENST00000591442 263 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 HSPE1P7-201ENST00000604681 321 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 ADAM3A-203ENST00000461344 2157 ntBASIC3.86□□□□□ -1.79
CCDC140Q96MF4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC140Q96MF4 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RNU1-140P-201ENST00000365040 165 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RNA5SP428-201ENST00000365129 132 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RPL21P1-201ENST00000399532 476 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 HSPE1P12-201ENST00000412576 301 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 MAP1LC3BP1-201ENST00000417653 379 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC140Q96MF4 CYCSP32-201ENST00000440548 321 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL513124.1-201ENST00000450410 614 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 TOMM22P6-201ENST00000465035 409 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 MRPL42P6-201ENST00000486397 371 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RN7SL244P-201ENST00000493405 297 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RNA5SP309-201ENST00000516670 106 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 SNORA40.15-201ENST00000516884 107 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.706-201ENST00000516933 99 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RN7SKP147-201ENST00000517154 244 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 RPL23AP53-201ENST00000521854 457 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 NACAP3-201ENST00000552100 481 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AC090517.1-201ENST00000569307 266 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AC078899.3-201ENST00000599065 212 ntBASIC3.85□□□□□ -1.79
CCDC140Q96MF4 AL390123.1-201ENST00000603216 237 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms