Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 RNU6-1284P-201ENST00000363701 100 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 SNORA80A-201ENST00000363922 136 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 RNU5E-5P-201ENST00000365379 116 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 RNY3P13-201ENST00000365542 102 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 CRISP3-203ENST00000371159 872 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 RNU6-217P-201ENST00000384164 104 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AL049545.1-201ENST00000401856 572 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 RNA5SP21-201ENST00000410917 96 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AL513477.1-202ENST00000417061 214 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 MTND2P18-201ENST00000419962 1030 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 SSXP1-201ENST00000453640 473 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 MTND4LP3-201ENST00000468320 276 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC092104.1-201ENST00000497346 1441 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 RN7SKP132-201ENST00000516001 208 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 RNU6-927P-201ENST00000516199 100 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC107934.1-201ENST00000522215 217 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AHI1-217ENST00000534469 680 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 ROCK1P1-201ENST00000573767 549 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 MIR4446-201ENST00000578505 67 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 MIR3915-201ENST00000578518 97 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 ELOCP29-201ENST00000588193 334 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC008739.2-201ENST00000597006 317 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AP000860.1-201ENST00000605250 559 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 BX664608.1-201ENST00000610519 487 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 C8orf59-208ENST00000612809 475 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SKA3Q8IX90 AC019226.2-201ENST00000625973 424 ntBASIC2.38□□□□□ -2.03
SKA3Q8IX90 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA3Q8IX90 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SKA3Q8IX90 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 FTLP6-201ENST00000355274 422 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RNU6-7-201ENST00000364784 107 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RNU6-8-201ENST00000365467 107 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AF228730.1-201ENST00000397972 663 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 EIF4EBP2P3-201ENST00000403144 334 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 NDUFS5P1-201ENST00000405668 289 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC092047.1-201ENST00000424997 240 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 TRIM60P10Y-201ENST00000425589 751 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 USP9YP12-201ENST00000450481 570 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC013267.1-201ENST00000458227 267 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC138853.1-201ENST00000503549 823 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RPL37P25-201ENST00000507308 276 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 SNORA31.11-201ENST00000516528 139 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RNA5SP290-201ENST00000517133 127 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RNA5SP402-201ENST00000517148 110 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 RN7SKP258-201ENST00000517151 304 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 SNORA31.21-201ENST00000517180 77 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 ATP5F1P5-201ENST00000526403 760 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 MRPS36P5-201ENST00000551909 298 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 MIR5194-201ENST00000582634 120 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 MIR548AB-201ENST00000584917 84 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SKA3Q8IX90 AL161729.4-201ENST00000604650 476 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AL031775.1-201ENST00000607014 887 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AL161734.1-201ENST00000609720 557 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 DLEU2_6.1-201ENST00000610536 112 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC092140.2-201ENST00000618027 521 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC006338.1-201ENST00000618453 749 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 AC091953.2-201ENST00000623979 160 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.37□□□□□ -2.03
SKA3Q8IX90 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.37□□□□□ -2.03
SKA3Q8IX90 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SKA3Q8IX90 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
SKA3Q8IX90 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SKA3Q8IX90 RNU6-140P-201ENST00000384566 108 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 SNORD115.1-201ENST00000391109 76 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 RNA5SP181-201ENST00000410246 98 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 Y_RNA.608-201ENST00000410647 95 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 RPS15AP12-201ENST00000419498 388 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 AC093843.1-201ENST00000424395 512 ntTSL 2 BASIC2.36□□□□□ -2.03
SKA3Q8IX90 AC019097.1-201ENST00000424783 735 ntBASIC2.36□□□□□ -2.03
SKA3Q8IX90 RPL7P37-201ENST00000425095 738 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 213.2 ms