Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP53Q70EK8 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
USP53Q70EK8 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP53Q70EK8 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
USP53Q70EK8 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP53Q70EK8 Y_RNA.5-201ENST00000362334 102 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 Y_RNA.324-201ENST00000365165 102 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 AL158156.1-201ENST00000422509 473 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AC018865.2-201ENST00000423631 129 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 RPL7P2-201ENST00000427639 268 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AC236972.1-201ENST00000433225 199 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.24□□□□□ -1.73
USP53Q70EK8 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.24□□□□□ -1.73
USP53Q70EK8 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC4.24□□□□□ -1.73
USP53Q70EK8 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.24□□□□□ -1.73
USP53Q70EK8 RPL7P42-201ENST00000481005 679 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 DEFB109F-201ENST00000491870 277 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.24□□□□□ -1.73
USP53Q70EK8 TRAV37-201ENST00000553906 342 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC4.24□□□□□ -1.73
USP53Q70EK8 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.24□□□□□ -1.73
USP53Q70EK8 MIR6891-201ENST00000618788 93 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 SNORD39.4-201ENST00000620099 78 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 PLCE1P1-201ENST00000622094 305 ntBASIC4.24□□□□□ -1.73
USP53Q70EK8 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP53Q70EK8 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
USP53Q70EK8 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.24□□□□□ -1.73
USP53Q70EK8 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.24□□□□□ -1.73
USP53Q70EK8 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.23□□□□□ -1.73
USP53Q70EK8 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 Y_RNA.245-201ENST00000364493 95 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 Y_RNA.473-201ENST00000384333 102 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 RNU6-306P-201ENST00000384617 107 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.23□□□□□ -1.73
USP53Q70EK8 RNU2-33P-201ENST00000410344 192 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 RNU6-1025P-201ENST00000410629 104 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 EIF4EP1-201ENST00000422311 642 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 MYL8P-204ENST00000431574 518 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.23□□□□□ -1.73
USP53Q70EK8 AL035666.1-201ENST00000446195 348 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 RPL21P23-201ENST00000446654 460 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 RNU7-187P-201ENST00000458985 68 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 snoU13.22-201ENST00000459428 104 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC010469.1-201ENST00000463864 576 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AP000873.1-201ENST00000463987 400 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.23□□□□□ -1.73
USP53Q70EK8 AC011005.2-201ENST00000487324 359 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.23□□□□□ -1.73
USP53Q70EK8 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 MIR892C-201ENST00000516410 77 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 SNORA67.7-201ENST00000516664 135 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 RN7SKP295-201ENST00000517264 153 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC4.23□□□□□ -1.73
USP53Q70EK8 MIR3158-1-201ENST00000583596 81 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 AC011494.1-201ENST00000596454 237 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC136443.5-201ENST00000603741 370 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AP000942.4-201ENST00000604811 241 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
USP53Q70EK8 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC112484.5-201ENST00000624189 228 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC092608.2-201ENST00000624427 218 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 AC112200.1-201ENST00000625015 234 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 PSMD5-AS1-215ENST00000640622 205 ntBASIC4.23□□□□□ -1.73
USP53Q70EK8 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
USP53Q70EK8 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.23□□□□□ -1.73
USP53Q70EK8 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
USP53Q70EK8 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
USP53Q70EK8 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 MTND5P30-201ENST00000452896 1731 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.22□□□□□ -1.73
USP53Q70EK8 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC4.22□□□□□ -1.73
USP53Q70EK8 Y_RNA.148-201ENST00000363557 117 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
USP53Q70EK8 RNU6-741P-201ENST00000383889 107 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 RNU1-63P-201ENST00000383902 164 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 SNORD73A-201ENST00000386062 65 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 PPIAP31-201ENST00000405422 495 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 USP9YP30-201ENST00000430729 455 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 NDUFS5P3-201ENST00000450668 321 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 RPL31P13-201ENST00000484151 370 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.22□□□□□ -1.73
USP53Q70EK8 VWA8P1-201ENST00000510889 176 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 RNU1-45P-201ENST00000517191 141 ntBASIC4.22□□□□□ -1.73
USP53Q70EK8 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC4.22□□□□□ -1.73
USP53Q70EK8 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 348.7 ms