Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 MTCYBP20-201ENST00000524239 1129 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP41Q3LFD5 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 AC002545.1-201ENST00000592511 181 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 Z84480.1-201ENST00000605131 311 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 MIR6852-201ENST00000621699 66 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 AL136164.4-201ENST00000625013 2135 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 AL137790.1-201ENST00000634283 177 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.33□□□□□ -1.88
USP41Q3LFD5 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP41Q3LFD5 MTND5P29-201ENST00000458676 1807 ntBASIC3.33□□□□□ -1.88
USP41Q3LFD5 AC000403.1-201ENST00000613696 3585 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC007256.1-201ENST00000392253 2765 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP41Q3LFD5 RNU6-1215P-201ENST00000384441 102 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL451054.2-201ENST00000420896 202 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 GPR143P-201ENST00000434155 205 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC107083.1-201ENST00000439643 279 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 HMGB3P11-201ENST00000440127 604 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC020550.1-201ENST00000447385 163 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC007182.2-201ENST00000489251 402 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 RPL9P6-201ENST00000492764 598 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC108078.1-201ENST00000508073 725 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 RNU6-1092P-201ENST00000516955 87 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC124947.2-202ENST00000552735 133 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 SUB1P2-201ENST00000556401 297 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC010546.1-201ENST00000569391 485 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC098848.2-201ENST00000588023 330 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.6-201ENST00000603753 252 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.11-201ENST00000604059 253 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC008162.1-201ENST00000604718 254 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.1-201ENST00000604752 252 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.5-201ENST00000605253 252 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.12-201ENST00000605291 253 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.8-201ENST00000605353 252 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL670379.7-201ENST00000605823 252 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AP002360.4-201ENST00000606980 481 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC007684.1-201ENST00000609671 477 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC013562.2-201ENST00000611632 603 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 MIR7106-201ENST00000612419 65 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC090132.2-201ENST00000615881 347 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AL158209.2-201ENST00000619266 216 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC099654.12-201ENST00000639868 649 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP41Q3LFD5 AC008264.2-201ENST00000610193 3731 ntBASIC3.32□□□□□ -1.88
USP41Q3LFD5 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 RNU6-641P-201ENST00000384006 107 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 MIR558-201ENST00000384920 94 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 RNU6-192P-201ENST00000391253 100 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
USP41Q3LFD5 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 NDUFB4P7-201ENST00000423198 363 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AL590383.1-201ENST00000428602 75 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC073464.1-201ENST00000429823 534 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC236972.1-201ENST00000433225 199 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 MTND1P1-201ENST00000445453 368 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC132479.1-201ENST00000449160 144 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 RN7SL283P-201ENST00000489055 303 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 RN7SKP272-201ENST00000516988 232 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 RNU6-410P-201ENST00000517006 107 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC090572.1-201ENST00000519251 160 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 FAM92A1P1-201ENST00000528023 890 ntBASIC3.31□□□□□ -1.88
USP41Q3LFD5 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC3.31□□□□□ -1.88
USP41Q3LFD5 EIF1P4-201ENST00000572664 335 ntBASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms