Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC099778.2-201ENST00000610904 211 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC124864.2-201ENST00000624736 186 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 AC005609.4-201ENST00000625071 447 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 U6.98-201ENST00000637157 84 ntBASIC3.29□□□□□ -1.88
COL28A1Q2UY09 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
COL28A1Q2UY09 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 RNU1-75P-201ENST00000347264 129 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 RNU6-946P-201ENST00000383878 107 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 SNORA1.3-201ENST00000384676 136 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AL445529.1-201ENST00000398713 389 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 MTCO2P19-201ENST00000427513 598 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AL121890.1-201ENST00000435457 205 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 Z82210.1-201ENST00000440037 231 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 ATP5C1P1-201ENST00000441945 895 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 RNA5SP291-201ENST00000517222 105 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 IGKV2-26-201ENST00000518305 343 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 CASP1P1-201ENST00000526345 212 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC022690.1-201ENST00000526681 550 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 FAM92A1P1-201ENST00000528023 890 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AP003034.1-201ENST00000534621 422 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 SUB1P2-201ENST00000556401 297 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 DPPA3P3-201ENST00000603842 430 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AL391646.1-201ENST00000603860 190 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC007619.2-201ENST00000605743 379 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC093732.2-201ENST00000607950 274 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AP001486.3-201ENST00000615334 372 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AC027309.3-201ENST00000623419 351 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 MTND5P17-201ENST00000418405 1603 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 AL513302.2-201ENST00000562313 1842 ntBASIC3.28□□□□□ -1.88
COL28A1Q2UY09 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
COL28A1Q2UY09 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.28□□□□□ -1.89
COL28A1Q2UY09 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AL049641.1-201ENST00000441055 1948 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 TPTE2P4-201ENST00000258589 1605 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 OR56A5-201ENST00000340110 738 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 Y_RNA.1-201ENST00000352915 104 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 Y_RNA.159-201ENST00000363674 87 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RNU6-188P-201ENST00000364207 107 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 Y_RNA.367-201ENST00000365544 101 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RNU6-456P-201ENST00000384493 107 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RPS4XP3-201ENST00000398541 413 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AL139397.2-201ENST00000404529 772 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 FAT1P1-201ENST00000406588 507 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RNU4-55P-201ENST00000410731 137 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 MTATP6P18-201ENST00000417994 673 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC092047.1-201ENST00000424997 240 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC006989.1-201ENST00000427212 131 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RPL23AP30-201ENST00000432419 501 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC002486.1-201ENST00000435098 391 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AL451074.3-201ENST00000437709 472 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 BNIP3P2-201ENST00000441221 577 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 PSPHP1-201ENST00000450062 261 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 SSXP4-201ENST00000451349 245 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 U3.44-201ENST00000458938 192 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RNA5SP310-201ENST00000459084 116 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RNU6-953P-201ENST00000459154 107 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 RN7SL442P-201ENST00000473804 320 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC078785.3-201ENST00000476607 425 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AL160314.1-201ENST00000490836 438 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC079382.1-201ENST00000493346 557 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 YWHAEP4-201ENST00000505390 198 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 HMGB1P14-201ENST00000557424 591 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC017083.3-201ENST00000609955 700 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 ATP5A1P2-202ENST00000616464 443 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AC002076.2-201ENST00000617362 122 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 MIR6076-201ENST00000617521 113 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 AL589994.2-201ENST00000621124 579 ntBASIC3.27□□□□□ -1.89
COL28A1Q2UY09 VPS8-228ENST00000628962 207 ntTSL 5 BASIC3.27□□□□□ -1.89
COL28A1Q2UY09 MTND5P42-201ENST00000637720 498 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms