Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.83□□□□□ -1.8
COL4A3Q01955 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC3.83□□□□□ -1.8
COL4A3Q01955 AC073539.2-201ENST00000597113 165 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 SNORA62.6-201ENST00000606322 83 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AC011373.1-201ENST00000607270 237 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 AL138726.1-201ENST00000614873 333 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 PLCE1P1-201ENST00000622094 305 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL4A3Q01955 ZNF807-201ENST00000328088 1707 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 MTND5P30-201ENST00000452896 1731 ntBASIC3.83□□□□□ -1.8
COL4A3Q01955 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC008079.2-201ENST00000623543 20396 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 ZNF519P1-201ENST00000449011 1626 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
COL4A3Q01955 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
COL4A3Q01955 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC010329.2-201ENST00000595195 2737 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 SNORD3E-201ENST00000362899 217 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 SNORA75B-201ENST00000384053 137 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 Y_RNA.527-201ENST00000384573 102 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RNU6-1127P-201ENST00000384580 107 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RNU6-550P-201ENST00000391057 101 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 U3.29-201ENST00000391296 212 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 MIR548F4-201ENST00000408515 105 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RNA5SP293-201ENST00000410527 113 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC097713.2-201ENST00000430199 356 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC239809.1-201ENST00000450470 217 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 RPL21P10-201ENST00000463521 490 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RN7SL271P-201ENST00000487601 295 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RPL23AP55-201ENST00000498163 452 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC008526.1-201ENST00000509149 338 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 RNU6-1213P-201ENST00000517075 94 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.82□□□□□ -1.8
COL4A3Q01955 MIR4672-201ENST00000583126 81 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC008521.1-201ENST00000587471 187 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC012493.2-201ENST00000595083 291 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC008162.1-201ENST00000604718 254 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AL670379.4-201ENST00000605279 254 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 MIR6128-201ENST00000615528 109 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AC007485.1-201ENST00000616755 206 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AL669831.3-213ENST00000636676 183 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.82□□□□□ -1.8
COL4A3Q01955 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 BTBD10P1-201ENST00000549824 1352 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 ZNF734P-201ENST00000419494 1534 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 EXOC5P1-201ENST00000510543 1969 ntBASIC3.82□□□□□ -1.8
COL4A3Q01955 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A3Q01955 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL4A3Q01955 AC093775.1-201ENST00000624154 1868 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 UBE3AP2-201ENST00000429033 2259 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU6-1284P-201ENST00000363701 100 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU1-33P-201ENST00000364249 162 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU6-702P-201ENST00000364982 107 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC073587.1-201ENST00000447093 876 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 MTATP8P1-201ENST00000467115 207 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RN7SL601P-201ENST00000471221 293 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A3Q01955 RBBP4P6-201ENST00000508098 202 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC108078.2-201ENST00000510750 236 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A3Q01955 RNA5SP164-201ENST00000516533 110 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 RNU6-1271P-201ENST00000517049 105 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A3Q01955 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 AL355812.1-201ENST00000603215 216 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL670379.6-201ENST00000603753 252 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL670379.1-201ENST00000604752 252 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL670379.5-201ENST00000605253 252 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL670379.8-201ENST00000605353 252 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC012443.1-201ENST00000605605 231 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AL670379.7-201ENST00000605823 252 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AC110801.1-201ENST00000623590 212 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 AP000553.6-201ENST00000641242 118 ntBASIC3.81□□□□□ -1.8
COL4A3Q01955 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A3Q01955 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms