Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 KLF3P2-201ENST00000465138 268 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 AC109925.1-201ENST00000478069 331 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 MRPS36P2-201ENST00000512569 299 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 AC063919.1-201ENST00000514281 254 ntTSL 3 BASIC3.04□□□□□ -1.92
HNF4AP41235 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.04□□□□□ -1.92
HNF4AP41235 HSPE1P20-201ENST00000538133 289 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 RPL21P5-201ENST00000554662 472 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 AL133153.1-201ENST00000557756 303 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.04□□□□□ -1.92
HNF4AP41235 AC090578.1-201ENST00000604955 591 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 AC004696.1-201ENST00000614345 607 ntBASIC3.04□□□□□ -1.92
HNF4AP41235 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.04□□□□□ -1.92
HNF4AP41235 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
HNF4AP41235 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HNF4AP41235 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HNF4AP41235 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.03□□□□□ -1.92
HNF4AP41235 U8.9-201ENST00000365667 134 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RNU6-259P-201ENST00000383999 107 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RPL7P25-201ENST00000404151 721 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RN7SKP123-201ENST00000410732 291 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RN7SKP58-201ENST00000411010 305 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RPL21P24-201ENST00000413752 448 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC3.03□□□□□ -1.92
HNF4AP41235 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HNF4AP41235 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC3.03□□□□□ -1.92
HNF4AP41235 RPS12P18-201ENST00000442381 270 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 MTND6P13-201ENST00000443510 523 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 GAPDHP17-201ENST00000449858 1001 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 snoU109.1-201ENST00000459339 135 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RN7SL863P-201ENST00000462370 296 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 MRPS17P3-201ENST00000465453 385 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.03□□□□□ -1.92
HNF4AP41235 RPL9P33-201ENST00000484311 566 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RPL36AP51-201ENST00000487216 318 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RN7SL504P-201ENST00000494496 287 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RN7SKP298-201ENST00000515950 94 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 RNA5SP290-201ENST00000517133 127 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 AP003181.2-201ENST00000528941 181 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC007536.1-201ENST00000533382 349 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC137800.2-201ENST00000574375 120 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC103810.1-201ENST00000579873 453 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.03□□□□□ -1.92
HNF4AP41235 HMGN1P30-201ENST00000589286 268 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AL391813.2-201ENST00000609113 322 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC091834.1-201ENST00000614543 472 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AP001506.1-201ENST00000615444 211 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC108479.2-201ENST00000617314 601 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 AC112204.3-201ENST00000623822 332 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
HNF4AP41235 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC3.03□□□□□ -1.92
HNF4AP41235 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC3.03□□□□□ -1.92
HNF4AP41235 AC092125.1-201ENST00000562568 1995 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.03□□□□□ -1.92
HNF4AP41235 MTND5P33-201ENST00000571250 1450 ntBASIC3.03□□□□□ -1.93
HNF4AP41235 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC3.02□□□□□ -1.93
HNF4AP41235 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.02□□□□□ -1.93
HNF4AP41235 MTND5P19-201ENST00000424872 1794 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
HNF4AP41235 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
HNF4AP41235 AC093831.2-201ENST00000624393 3427 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNY4P24-201ENST00000362735 96 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 U8.3-201ENST00000363321 132 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNU6-648P-201ENST00000410190 107 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNU2-25P-201ENST00000411041 191 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC3.02□□□□□ -1.93
HNF4AP41235 RPL22P17-201ENST00000438729 315 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.02□□□□□ -1.93
HNF4AP41235 AC020550.1-201ENST00000447385 163 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.02□□□□□ -1.93
HNF4AP41235 RPL12P25-201ENST00000455592 494 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNU7-59P-201ENST00000459101 61 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RN7SL75P-201ENST00000461926 281 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 MTND1P3-201ENST00000484956 952 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNU6-927P-201ENST00000516199 100 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 SNORA18.6-201ENST00000516792 115 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RNU2-46P-201ENST00000517038 113 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 RN7SKP40-201ENST00000517211 242 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
HNF4AP41235 MTND1P5-201ENST00000517906 940 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AP003467.2-201ENST00000520175 319 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC3.02□□□□□ -1.93
HNF4AP41235 AP000857.1-201ENST00000532151 543 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.02□□□□□ -1.93
HNF4AP41235 AC123904.2-201ENST00000548059 300 ntBASIC3.02□□□□□ -1.93
HNF4AP41235 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.02□□□□□ -1.93
HNF4AP41235 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.02□□□□□ -1.93
HNF4AP41235 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC3.02□□□□□ -1.93
HNF4AP41235 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.02□□□□□ -1.93
HNF4AP41235 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms