Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC008162.1-201ENST00000604718 254 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.1-201ENST00000604752 252 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.5-201ENST00000605253 252 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.12-201ENST00000605291 253 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL136363.1-201ENST00000605349 337 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.8-201ENST00000605353 252 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AL670379.7-201ENST00000605823 252 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC012557.2-201ENST00000605919 418 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AP002360.4-201ENST00000606980 481 ntBASIC2.82□□□□□ -1.96
SOX3P41225 AC087241.4-201ENST00000612441 480 ntBASIC2.82□□□□□ -1.96
SOX3P41225 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC2.82□□□□□ -1.96
SOX3P41225 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC2.82□□□□□ -1.96
SOX3P41225 AC084035.1-201ENST00000634543 607 ntBASIC2.82□□□□□ -1.96
SOX3P41225 MINPP1-204ENST00000536010 2215 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SOX3P41225 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.82□□□□□ -1.96
SOX3P41225 MTND5P26-201ENST00000426018 1752 ntBASIC2.82□□□□□ -1.96
SOX3P41225 MAPK10-362ENST00000641864 4484 ntBASIC2.81□□□□□ -1.96
SOX3P41225 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
SOX3P41225 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
SOX3P41225 AL137003.2-201ENST00000606924 2538 ntBASIC2.81□□□□□ -1.96
SOX3P41225 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
SOX3P41225 RNU1-140P-201ENST00000365040 165 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC2.81□□□□□ -1.96
SOX3P41225 RNU6-39P-201ENST00000384344 107 ntBASIC2.81□□□□□ -1.96
SOX3P41225 MIR558-201ENST00000384920 94 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RNU6-1197P-201ENST00000391183 107 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RN7SKP123-201ENST00000410732 291 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 RAC1P6-201ENST00000423911 575 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.81□□□□□ -1.96
SOX3P41225 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 AL358934.1-201ENST00000432346 324 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 TAAR7P-201ENST00000436141 242 ntBASIC2.81□□□□□ -1.96
SOX3P41225 NDUFB4P6-201ENST00000436819 366 ntBASIC2.81□□□□□ -1.96
SOX3P41225 HMGB3P12-201ENST00000438745 556 ntBASIC2.81□□□□□ -1.96
SOX3P41225 DNAJC19P4-201ENST00000440115 345 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AC009237.8-201ENST00000445492 379 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 NANOGNBP1-201ENST00000448444 480 ntBASIC2.81□□□□□ -1.96
SOX3P41225 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC2.81□□□□□ -1.96
SOX3P41225 C1DP4-201ENST00000455429 424 ntBASIC2.81□□□□□ -1.96
SOX3P41225 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 RPS3AP17-201ENST00000472594 777 ntBASIC2.81□□□□□ -1.96
SOX3P41225 SNORA31.3-201ENST00000516029 96 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RNU6-720P-201ENST00000516363 108 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RNU6-1256P-201ENST00000516539 103 ntBASIC2.81□□□□□ -1.96
SOX3P41225 RNU6-1092P-201ENST00000516955 87 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AP006587.4-201ENST00000526053 529 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
SOX3P41225 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 NTS-203ENST00000551529 801 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC2.81□□□□□ -1.96
SOX3P41225 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.81□□□□□ -1.96
SOX3P41225 AC013553.2-201ENST00000604244 589 ntBASIC2.81□□□□□ -1.96
SOX3P41225 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.81□□□□□ -1.96
SOX3P41225 AC098679.4-201ENST00000624241 654 ntBASIC2.81□□□□□ -1.96
SOX3P41225 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC2.81□□□□□ -1.96
SOX3P41225 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC2.81□□□□□ -1.96
SOX3P41225 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.81□□□□□ -1.96
SOX3P41225 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.81□□□□□ -1.96
SOX3P41225 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SOX3P41225 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC2.8□□□□□ -1.96
SOX3P41225 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC2.8□□□□□ -1.96
SOX3P41225 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.8□□□□□ -1.96
SOX3P41225 AC108206.1-201ENST00000570186 4159 ntBASIC2.8□□□□□ -1.96
SOX3P41225 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
SOX3P41225 RNU6-282P-201ENST00000365357 103 ntBASIC2.8□□□□□ -1.96
SOX3P41225 RNU6-1103P-201ENST00000384150 107 ntBASIC2.8□□□□□ -1.96
SOX3P41225 RPL17P50-201ENST00000396131 546 ntBASIC2.8□□□□□ -1.96
SOX3P41225 NDUFB4P4-201ENST00000404822 243 ntBASIC2.8□□□□□ -1.96
SOX3P41225 NDUFS5P1-201ENST00000405668 289 ntBASIC2.8□□□□□ -1.96
SOX3P41225 GSTA9P-201ENST00000406231 611 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 RPL35AP12-201ENST00000425362 338 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AC104651.1-201ENST00000427559 735 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AC093151.1-201ENST00000427711 313 ntBASIC2.8□□□□□ -1.96
SOX3P41225 MTCO2P11-201ENST00000431069 680 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.8□□□□□ -1.96
SOX3P41225 CBWD4P-201ENST00000445695 655 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC2.8□□□□□ -1.96
SOX3P41225 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.8□□□□□ -1.96
SOX3P41225 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.8□□□□□ -1.96
SOX3P41225 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SOX3P41225 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC2.8□□□□□ -1.96
SOX3P41225 AC012181.1-201ENST00000479895 423 ntBASIC2.8□□□□□ -1.96
SOX3P41225 RN7SL432P-201ENST00000484057 298 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AC108078.1-201ENST00000508073 725 ntBASIC2.8□□□□□ -1.96
SOX3P41225 MTND4LP22-201ENST00000508209 276 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC2.8□□□□□ -1.96
SOX3P41225 RNU6-927P-201ENST00000516199 100 ntBASIC2.8□□□□□ -1.96
SOX3P41225 SCARNA24.1-201ENST00000516465 137 ntBASIC2.8□□□□□ -1.96
SOX3P41225 ZNF706-202ENST00000517844 604 ntAPPRIS P1 TSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 HMGB1P41-201ENST00000520234 440 ntBASIC2.8□□□□□ -1.96
SOX3P41225 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC2.8□□□□□ -1.96
SOX3P41225 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms