Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC2.19□□□□□ -2.06
BRCA1P38398 AC087241.2-201ENST00000535801 324 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 AC103987.3-201ENST00000582071 292 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 MIR3616-201ENST00000584070 92 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 BNIP3P26-201ENST00000600827 554 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 MTND4LP5-201ENST00000605152 292 ntBASIC2.19□□□□□ -2.06
BRCA1P38398 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
BRCA1P38398 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
BRCA1P38398 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
BRCA1P38398 RNU6-1035P-201ENST00000384477 107 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 RNU6-952P-201ENST00000391164 108 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 RNA5SP338-201ENST00000410495 85 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC099548.1-201ENST00000421443 426 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 RPL23AP7-203ENST00000449021 469 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 AIG1P1-201ENST00000503376 148 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 MTCYBP17-201ENST00000503579 789 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC079395.1-201ENST00000510981 262 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 HSPE1P20-201ENST00000538133 289 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
BRCA1P38398 MYL12BP1-201ENST00000569826 507 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AL390208.1-201ENST00000605885 644 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC019226.1-201ENST00000625666 515 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC2.18□□□□□ -2.06
BRCA1P38398 UBE2Q2P1-202ENST00000354771 883 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 SNRPEP2-201ENST00000397592 279 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 HMGB1P17-201ENST00000403495 628 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 RNU2-20P-201ENST00000410425 191 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 USP9YP6-201ENST00000413550 854 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 AL358075.3-201ENST00000426289 226 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 AC009296.1-201ENST00000443146 155 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 snoU13.8-201ENST00000458890 104 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC079203.1-201ENST00000487972 404 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 RPL21P131-201ENST00000497298 483 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.18□□□□□ -2.06
BRCA1P38398 AL132657.2-201ENST00000564417 358 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 MIR5571-201ENST00000577998 113 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AL353997.4-201ENST00000586196 166 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC2.18□□□□□ -2.06
BRCA1P38398 AC091057.2-201ENST00000602594 792 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC009314.1-201ENST00000603871 304 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC024560.3-201ENST00000608482 349 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 AC123767.1-202ENST00000620407 817 ntBASIC2.18□□□□□ -2.06
BRCA1P38398 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
BRCA1P38398 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
BRCA1P38398 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC2.17□□□□□ -2.06
BRCA1P38398 MTND5P35-201ENST00000557537 1720 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.17□□□□□ -2.06
BRCA1P38398 Z85995.1-201ENST00000415547 335 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 UBE2V1P13-201ENST00000436983 439 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 AL451074.3-201ENST00000437709 472 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
BRCA1P38398 SSXP1-201ENST00000453640 473 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.17□□□□□ -2.06
BRCA1P38398 AC080013.2-201ENST00000460866 323 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 MTND4LP3-201ENST00000468320 276 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC2.17□□□□□ -2.06
BRCA1P38398 SUMO2P5-201ENST00000506790 245 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
BRCA1P38398 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.17□□□□□ -2.06
BRCA1P38398 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC2.17□□□□□ -2.06
BRCA1P38398 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC2.17□□□□□ -2.06
BRCA1P38398 AC104072.1-201ENST00000568817 668 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 AC009237.15-201ENST00000610252 501 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 MTND1P37-201ENST00000636562 264 ntBASIC2.17□□□□□ -2.06
BRCA1P38398 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
BRCA1P38398 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
BRCA1P38398 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.16□□□□□ -2.06
BRCA1P38398 RNU4-51P-201ENST00000364206 140 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 HMGB1P27-201ENST00000431429 603 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AL049734.2-201ENST00000441066 616 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 RPS15AP27-201ENST00000449183 343 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RNU7-136P-201ENST00000458819 69 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RBM43P1-201ENST00000476891 1081 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC104629.1-201ENST00000494226 508 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RPS27P26-201ENST00000494583 239 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 SEM1P1-201ENST00000506694 209 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 SCARNA3-201ENST00000517097 143 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 COX6CP5-201ENST00000527162 228 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC009117.2-201ENST00000565374 504 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AC091043.1-201ENST00000579830 453 ntTSL 3 BASIC2.16□□□□□ -2.06
BRCA1P38398 AL022067.1-201ENST00000602426 454 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 MIR502-201ENST00000606349 86 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RNU6-88P-201ENST00000606801 100 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.16□□□□□ -2.06
BRCA1P38398 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
BRCA1P38398 RNU6-741P-201ENST00000383889 107 ntBASIC2.16□□□□□ -2.06
BRCA1P38398 RNU6-1257P-201ENST00000384625 110 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms