Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.57□□□□□ -1.84
HOXD9P28356 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 AL645937.1-201ENST00000641739 1652 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 TAB3P1-202ENST00000452645 1634 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 RNA5SP502-201ENST00000362694 119 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 SNORA63-201ENST00000363450 132 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 SNORA62.1-201ENST00000364287 154 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU6-522P-201ENST00000364497 107 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU6-641P-201ENST00000384006 107 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU6-637P-201ENST00000384050 107 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU6-1029P-201ENST00000384109 107 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU6-432P-201ENST00000384196 109 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 SNORD37.1-201ENST00000390968 65 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 HSPE1P26-201ENST00000405341 275 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 SNORA11.1-201ENST00000408133 129 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU4-26P-201ENST00000410270 107 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RN7SKP111-201ENST00000410349 271 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU2-36P-201ENST00000410361 191 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNA5SP107-201ENST00000411358 122 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 ARL5AP1-201ENST00000418991 388 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC005019.1-201ENST00000436455 431 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD9P28356 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 AL118520.1-201ENST00000450770 291 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RPS29P15-201ENST00000458329 171 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RNU7-180P-201ENST00000459240 63 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RPL21P10-201ENST00000463521 490 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 VN1R17P-201ENST00000472048 1090 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 RPL21P99-201ENST00000480369 423 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC093663.1-201ENST00000497190 394 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 FAM206BP-201ENST00000510179 541 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD9P28356 IGKV2-26-201ENST00000518305 343 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 DEFB108D-201ENST00000527787 222 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD9P28356 SCOCP1-201ENST00000554676 349 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 NCAPGP2-201ENST00000557911 754 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 AC005668.1-201ENST00000571142 476 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 MIR4703-201ENST00000577728 79 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.56□□□□□ -1.84
HOXD9P28356 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC3.56□□□□□ -1.84
HOXD9P28356 SNORD84-203ENST00000584275 78 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC067852.3-201ENST00000589177 561 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC022432.1-201ENST00000595739 310 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.56□□□□□ -1.84
HOXD9P28356 AC006023.2-201ENST00000609916 167 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC022149.2-201ENST00000621061 203 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 AC011155.2-201ENST00000623202 216 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 CEP170P1-201ENST00000502249 4587 ntBASIC3.56□□□□□ -1.84
HOXD9P28356 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HOXD9P28356 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HOXD9P28356 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.55□□□□□ -1.84
HOXD9P28356 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 MTND5P1-201ENST00000445440 1375 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.67-201ENST00000362870 100 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.184-201ENST00000363884 108 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RNU6-692P-201ENST00000384496 107 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RNU6-831P-201ENST00000384548 107 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AL109755.1-201ENST00000401791 649 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RNU2-71P-201ENST00000411395 189 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 HSPE1P1-201ENST00000421494 318 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AL158156.1-201ENST00000422509 473 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AC002075.2-201ENST00000425207 252 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC3.55□□□□□ -1.84
HOXD9P28356 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HOXD9P28356 RPS29P31-201ENST00000446147 164 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 RPL7P23-201ENST00000493874 747 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 TTC39CP1-201ENST00000512513 755 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 Y_RNA.665-201ENST00000516177 98 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RNU2-27P-201ENST00000516185 142 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 RNA5SP503-201ENST00000517047 117 ntBASIC3.55□□□□□ -1.84
HOXD9P28356 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.55□□□□□ -1.84
HOXD9P28356 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 142.9 ms