Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
BDNFP23560 NDUFB4P4-201ENST00000404822 243 ntBASIC3.24□□□□□ -1.89
BDNFP23560 RNU2-36P-201ENST00000410361 191 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC080125.1-201ENST00000414888 684 ntBASIC3.24□□□□□ -1.89
BDNFP23560 RPL35AP12-201ENST00000425362 338 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 AL590365.1-201ENST00000450788 243 ntBASIC3.24□□□□□ -1.89
BDNFP23560 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 SNRPFP4-201ENST00000456366 242 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC093899.1-201ENST00000457984 376 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC011825.1-201ENST00000484967 388 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC3.24□□□□□ -1.89
BDNFP23560 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.24□□□□□ -1.89
BDNFP23560 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 AF131216.2-201ENST00000512316 564 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 RNA5SP112-201ENST00000515937 99 ntBASIC3.24□□□□□ -1.89
BDNFP23560 SNORA64.4-201ENST00000516632 81 ntBASIC3.24□□□□□ -1.89
BDNFP23560 SCARNA3-201ENST00000517097 143 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC3.24□□□□□ -1.89
BDNFP23560 ARL2BPP2-201ENST00000550907 489 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.24□□□□□ -1.89
BDNFP23560 AC009094.1-201ENST00000564443 426 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC023824.2-201ENST00000566185 400 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC012435.1-202ENST00000568772 240 ntBASIC3.24□□□□□ -1.89
BDNFP23560 MIR4765-201ENST00000585007 77 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.24□□□□□ -1.89
BDNFP23560 AC024153.1-201ENST00000603103 365 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AL355816.2-201ENST00000610049 647 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC135507.2-201ENST00000612443 309 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC010678.1-201ENST00000614118 713 ntBASIC3.24□□□□□ -1.89
BDNFP23560 AC131159.1-201ENST00000621854 213 ntBASIC3.24□□□□□ -1.89
BDNFP23560 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
BDNFP23560 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BDNFP23560 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
BDNFP23560 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
BDNFP23560 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
BDNFP23560 UBA52P6-201ENST00000399822 382 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC093151.3-203ENST00000422305 514 ntTSL 3 BASIC3.23□□□□□ -1.89
BDNFP23560 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.23□□□□□ -1.89
BDNFP23560 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.23□□□□□ -1.89
BDNFP23560 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.23□□□□□ -1.89
BDNFP23560 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.23□□□□□ -1.89
BDNFP23560 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.23□□□□□ -1.89
BDNFP23560 RPL30P6-201ENST00000475925 342 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.23□□□□□ -1.89
BDNFP23560 RNA5SP217-201ENST00000515959 91 ntBASIC3.23□□□□□ -1.89
BDNFP23560 RN7SKP272-201ENST00000516988 232 ntBASIC3.23□□□□□ -1.89
BDNFP23560 RNU6-1183P-201ENST00000517054 60 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC107934.1-201ENST00000522215 217 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AP003122.3-201ENST00000526316 255 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC084851.1-201ENST00000529105 249 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.23□□□□□ -1.89
BDNFP23560 AC090616.2-202ENST00000584248 222 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC091152.3-201ENST00000604227 325 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AL359854.1-201ENST00000614203 1594 ntBASIC3.23□□□□□ -1.89
BDNFP23560 AC091953.2-201ENST00000623979 160 ntBASIC3.23□□□□□ -1.89
BDNFP23560 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC3.23□□□□□ -1.89
BDNFP23560 Z99571.1-201ENST00000636677 394 ntBASIC3.23□□□□□ -1.89
BDNFP23560 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.23□□□□□ -1.89
BDNFP23560 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
BDNFP23560 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
BDNFP23560 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 RNU6-486P-201ENST00000363116 107 ntBASIC3.22□□□□□ -1.89
BDNFP23560 RNU6-748P-201ENST00000384648 107 ntBASIC3.22□□□□□ -1.89
BDNFP23560 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 Z99497.1-201ENST00000421282 135 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AL593851.1-201ENST00000426171 157 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC3.22□□□□□ -1.89
BDNFP23560 RPS12P18-201ENST00000442381 270 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.22□□□□□ -1.89
BDNFP23560 COX6CP12-201ENST00000446748 202 ntBASIC3.22□□□□□ -1.89
BDNFP23560 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.22□□□□□ -1.89
BDNFP23560 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.22□□□□□ -1.89
BDNFP23560 AC125238.1-201ENST00000448842 249 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC098799.2-201ENST00000509466 868 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC3.22□□□□□ -1.89
BDNFP23560 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.22□□□□□ -1.89
BDNFP23560 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.22□□□□□ -1.89
BDNFP23560 MIR3199-1-201ENST00000582434 88 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC083760.1-201ENST00000589621 670 ntBASIC3.22□□□□□ -1.89
BDNFP23560 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC103710.2-201ENST00000609912 942 ntBASIC3.22□□□□□ -1.89
BDNFP23560 AC092192.1-201ENST00000633154 1018 ntBASIC3.22□□□□□ -1.89
BDNFP23560 CU459211.1-201ENST00000635667 749 ntBASIC3.22□□□□□ -1.89
BDNFP23560 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
BDNFP23560 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.21□□□□□ -1.89
BDNFP23560 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.89
BDNFP23560 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
BDNFP23560 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
BDNFP23560 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
BDNFP23560 RNU1-140P-201ENST00000365040 165 ntBASIC3.21□□□□□ -1.9
BDNFP23560 RNU6-805P-201ENST00000365643 106 ntBASIC3.21□□□□□ -1.9
BDNFP23560 SMIM11P1-201ENST00000369586 178 ntBASIC3.21□□□□□ -1.9
BDNFP23560 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms