Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A1P12109 DEFB107A-201ENST00000335021 389 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A1P12109 DEFB107B-201ENST00000355602 389 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A1P12109 RNA5SP295-201ENST00000362655 121 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RNU5E-6P-201ENST00000365574 115 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC117470.1-201ENST00000381974 330 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 MIR195-201ENST00000385194 87 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RN7SKP167-201ENST00000411047 285 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RNU6-387P-201ENST00000411331 105 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RNU6-516P-201ENST00000411381 104 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.43□□□□□ -1.7
COL6A1P12109 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A1P12109 AL035423.1-201ENST00000420331 213 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A1P12109 AF228730.2-201ENST00000438784 848 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 Y_RNA.653-201ENST00000459091 95 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC4.43□□□□□ -1.7
COL6A1P12109 AC021146.2-201ENST00000504736 556 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC104619.4-201ENST00000510773 249 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RN7SKP24-201ENST00000515888 284 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RNU6-1088P-201ENST00000516850 104 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 RNU6-64P-201ENST00000517119 105 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC022634.1-201ENST00000520765 532 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC018630.1-201ENST00000541376 925 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A1P12109 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.43□□□□□ -1.7
COL6A1P12109 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.43□□□□□ -1.7
COL6A1P12109 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.43□□□□□ -1.7
COL6A1P12109 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.43□□□□□ -1.7
COL6A1P12109 AC106782.4-201ENST00000568264 210 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC025627.2-201ENST00000576220 160 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC4.43□□□□□ -1.7
COL6A1P12109 AC100830.2-201ENST00000581636 240 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AC091167.4-201ENST00000605079 184 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 AL132822.1-201ENST00000617063 513 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 MTND5P10-201ENST00000603719 1809 ntBASIC4.43□□□□□ -1.7
COL6A1P12109 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC4.43□□□□□ -1.7
COL6A1P12109 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL6A1P12109 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
COL6A1P12109 AP001148.1-201ENST00000624124 2359 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A1P12109 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A1P12109 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL6A1P12109 RNU6-173P-201ENST00000364215 104 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 SNORD115-7-201ENST00000365306 82 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 RNA5SP107-201ENST00000411358 122 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 AC092447.6-201ENST00000414578 210 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 AC133106.1-201ENST00000419029 397 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 AL137014.1-201ENST00000420490 1226 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 AL591419.1-201ENST00000427423 339 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 HMGN2P16-201ENST00000456802 261 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC4.42□□□□□ -1.7
COL6A1P12109 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.42□□□□□ -1.7
COL6A1P12109 DEFB109F-201ENST00000491870 277 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 RPL29P14-201ENST00000495837 428 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.42□□□□□ -1.7
COL6A1P12109 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 AC017037.2-201ENST00000513850 890 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 AC007513.1-201ENST00000548740 379 ntTSL 3 BASIC4.42□□□□□ -1.7
COL6A1P12109 IMMP1LP2-201ENST00000552954 492 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 Z82243.1-201ENST00000609432 473 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 MIR3651-201ENST00000630427 90 ntBASIC4.42□□□□□ -1.7
COL6A1P12109 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.42□□□□□ -1.7
COL6A1P12109 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A1P12109 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A1P12109 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.42□□□□□ -1.7
COL6A1P12109 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.42□□□□□ -1.7
COL6A1P12109 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
COL6A1P12109 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL6A1P12109 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.41□□□□□ -1.7
COL6A1P12109 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
COL6A1P12109 AC007823.1-201ENST00000569932 1566 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.41□□□□□ -1.7
COL6A1P12109 Y_RNA.28-201ENST00000362554 111 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 SNORA24.1-201ENST00000384401 135 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 EIF4E2P1-201ENST00000393781 255 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AP000567.1-201ENST00000406413 156 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNU4-65P-201ENST00000410473 140 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RNU6-1304P-201ENST00000411374 106 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 POLHP1-201ENST00000411806 470 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AL160275.2-201ENST00000412010 394 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 BX323014.1-201ENST00000412876 237 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.41□□□□□ -1.7
COL6A1P12109 FABP5P14-201ENST00000437273 393 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 RPL23AP89-201ENST00000439324 255 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC005094.1-201ENST00000440420 368 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 IPO7P1-201ENST00000442031 636 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC005008.1-201ENST00000456151 612 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 CCDC34P1-201ENST00000507441 517 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC104806.1-201ENST00000508720 308 ntBASIC4.41□□□□□ -1.7
COL6A1P12109 AC098591.2-201ENST00000510152 315 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms