Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RNA5SP139-201ENST00000364340 117 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 Y_RNA.296-201ENST00000364930 108 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 Y_RNA.582-201ENST00000391023 95 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 RNU4-47P-201ENST00000410876 114 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AC096664.2-201ENST00000411843 406 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AL160162.1-202ENST00000417654 244 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 AL109913.1-201ENST00000421173 514 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 RPL7P46-201ENST00000425129 740 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXC11O43248 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 ATP5C1P1-201ENST00000441945 895 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXC11O43248 RNU7-23P-201ENST00000459465 62 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC3.42□□□□□ -1.86
HOXC11O43248 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXC11O43248 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
HOXC11O43248 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.42□□□□□ -1.86
HOXC11O43248 OR5B19P-201ENST00000531766 928 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.42□□□□□ -1.86
HOXC11O43248 AL133383.1-201ENST00000569292 901 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 AC091805.2-201ENST00000603848 235 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AL121992.2-201ENST00000606262 256 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AC103591.3-201ENST00000608684 209 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 AL356321.1-201ENST00000621360 228 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 Z99571.1-201ENST00000636677 394 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
HOXC11O43248 MAPK10-322ENST00000641485 4530 ntBASIC3.42□□□□□ -1.86
HOXC11O43248 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC11O43248 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXC11O43248 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC092435.3-201ENST00000565538 3654 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 FAM35CP-201ENST00000554755 2470 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 RNA5SP374-201ENST00000362939 125 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 RNU6-623P-201ENST00000363143 105 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXC11O43248 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC11O43248 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXC11O43248 AL714022.1-201ENST00000439897 151 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 RPS24P13-201ENST00000442520 397 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC11O43248 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC11O43248 AC008264.1-201ENST00000447612 367 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 AC006539.3-201ENST00000454258 129 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 TPT1P7-201ENST00000458300 517 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 RPL23AP67-201ENST00000465341 474 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC11O43248 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXC11O43248 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.41□□□□□ -1.86
HOXC11O43248 AC011471.1-201ENST00000585766 187 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC3.41□□□□□ -1.86
HOXC11O43248 DUSP12P1-201ENST00000612874 516 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 U6.114-201ENST00000636407 96 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 AL513302.2-201ENST00000562313 1842 ntBASIC3.41□□□□□ -1.86
HOXC11O43248 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
HOXC11O43248 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC11O43248 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
HOXC11O43248 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
HOXC11O43248 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXC11O43248 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC3.4□□□□□ -1.86
HOXC11O43248 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC11O43248 RNU6-282P-201ENST00000365357 103 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 SNORA24.1-201ENST00000384401 135 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 SNORA48.2-201ENST00000390926 124 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC3.4□□□□□ -1.87
HOXC11O43248 RNU2-16P-201ENST00000410712 136 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC092809.3-201ENST00000415453 231 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 MORF4L1P6-201ENST00000418771 268 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
HOXC11O43248 MTATP6P16-201ENST00000434543 526 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC11O43248 RPL37P4-201ENST00000448908 268 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXC11O43248 MTCYBP1-201ENST00000454315 1119 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC3.4□□□□□ -1.87
HOXC11O43248 RPS4XP2-201ENST00000458402 793 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC109925.1-201ENST00000478069 331 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 RNU6-914P-201ENST00000516749 109 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC3.4□□□□□ -1.87
HOXC11O43248 AP001646.1-201ENST00000527936 915 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 OR4R1P-201ENST00000529879 463 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 SUB1P2-201ENST00000556401 297 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AL391261.3-201ENST00000557194 520 ntBASIC3.4□□□□□ -1.87
HOXC11O43248 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC3.4□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms