Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AF127577.6-201ENST00000623352 2191 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC006504.1-201ENST00000562493 3666 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM38O00635 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
TRIM38O00635 AC073343.1-201ENST00000328239 651 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RNU6-1097P-201ENST00000363586 107 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RNU6-960P-201ENST00000364056 120 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RNU6-169P-201ENST00000365336 107 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM38O00635 Y_RNA.431-201ENST00000384086 102 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 MIR493-201ENST00000385254 89 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AP000567.1-201ENST00000406413 156 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 HSPE1P8-201ENST00000406997 288 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RNU2-36P-201ENST00000410361 191 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RN7SKP140-201ENST00000411196 284 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 OR9R1P-201ENST00000412200 877 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RPL21P109-201ENST00000422213 475 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AL353678.1-201ENST00000422735 741 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AL591419.1-201ENST00000427423 339 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 NDUFB4P6-201ENST00000436819 366 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 HMGB1P37-201ENST00000439613 609 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 IPO7P1-201ENST00000442031 636 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC006480.1-201ENST00000449887 378 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM38O00635 RPS23P3-201ENST00000470993 430 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.8□□□□□ -1.8
TRIM38O00635 AC007182.2-201ENST00000489251 402 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 UBE2CP3-201ENST00000502715 450 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 HMGB3P15-201ENST00000507326 574 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC010493.1-201ENST00000513479 292 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 RNU6-410P-201ENST00000517006 107 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC087369.1-201ENST00000520775 996 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC3.8□□□□□ -1.8
TRIM38O00635 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM38O00635 AC243972.3-201ENST00000539655 198 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC3.8□□□□□ -1.8
TRIM38O00635 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC3.8□□□□□ -1.8
TRIM38O00635 GLUD1P4-201ENST00000590914 418 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC012507.3-201ENST00000603556 477 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC007621.1-201ENST00000604544 437 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC007179.3-201ENST00000604976 235 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 BRDTP1-201ENST00000605735 677 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AL355802.3-201ENST00000607571 545 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.8□□□□□ -1.8
TRIM38O00635 AL357559.1-201ENST00000622228 274 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 AC007792.1-201ENST00000623023 402 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 ANKRD26P2-201ENST00000445530 1710 ntBASIC3.8□□□□□ -1.8
TRIM38O00635 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
TRIM38O00635 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM38O00635 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.79□□□□□ -1.8
TRIM38O00635 ZNF807-201ENST00000328088 1707 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 OR5J1P-201ENST00000313544 939 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 Y_RNA.381-201ENST00000365666 102 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 MIR558-201ENST00000384920 94 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 MT-TR-201ENST00000387439 65 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.79□□□□□ -1.8
TRIM38O00635 AL035423.1-201ENST00000420331 213 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AL139247.1-201ENST00000422768 325 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC017083.1-201ENST00000428093 483 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC3.79□□□□□ -1.8
TRIM38O00635 HMGN2P31-201ENST00000432430 273 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 GPR143P-201ENST00000434155 205 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 HMGB3P12-201ENST00000438745 556 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 BRK1P2-201ENST00000442875 223 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC132479.1-201ENST00000449160 144 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM38O00635 ANP32BP2-201ENST00000454525 545 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 RPL21P11-201ENST00000461458 483 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AL133162.1-201ENST00000463228 453 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC110768.1-201ENST00000509222 400 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM38O00635 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM38O00635 RNU6-927P-201ENST00000516199 100 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC090572.1-201ENST00000519251 160 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 ATP5F1P5-201ENST00000526403 760 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AP003034.1-201ENST00000534621 422 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.79□□□□□ -1.8
TRIM38O00635 MIR3171-201ENST00000584270 74 ntBASIC3.79□□□□□ -1.8
TRIM38O00635 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
TRIM38O00635 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM38O00635 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.78□□□□□ -1.8
TRIM38O00635 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.78□□□□□ -1.8
TRIM38O00635 MTND5P1-201ENST00000445440 1375 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
TRIM38O00635 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.78□□□□□ -1.8
TRIM38O00635 Y_RNA.159-201ENST00000363674 87 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RNU6-282P-201ENST00000365357 103 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RNU6-741P-201ENST00000383889 107 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RNU6-574P-201ENST00000384265 107 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RNU6-1160P-201ENST00000384546 104 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 NDUFS5P1-201ENST00000405668 289 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RNA5SP118-201ENST00000410385 109 ntBASIC3.78□□□□□ -1.8
TRIM38O00635 RPL30P2-201ENST00000414021 291 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms