| BACE2 | Q9Y5Z0 | Z99755.1-201 | ENST00000414048 | 380 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL078601.2-201 | ENST00000429444 | 474 nt | TSL 2 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC073063.1-201 | ENST00000434352 | 607 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL354949.1-201 | ENST00000446438 | 170 nt | TSL 2 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC011897.1-201 | ENST00000450715 | 346 nt | TSL 3 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RNU7-138P-201 | ENST00000459479 | 64 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RPL23AP2-201 | ENST00000471227 | 466 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RPL31P60-201 | ENST00000478450 | 367 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AP000926.1-201 | ENST00000479573 | 241 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC025244.2-201 | ENST00000509215 | 422 nt | TSL 3 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNORA25.10-201 | ENST00000515926 | 124 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | TRAPPC2P2-201 | ENST00000517589 | 409 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | IFITM8P-201 | ENST00000522529 | 394 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC023442.3-203 | ENST00000530946 | 533 nt | TSL 4 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNRPGP16-201 | ENST00000533275 | 226 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | G2E3-AS1-202 | ENST00000550118 | 609 nt | TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL133166.1-202 | ENST00000550975 | 565 nt | TSL 4 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC074050.1-201 | ENST00000563247 | 211 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | EAF1-AS1-207 | ENST00000599742 | 772 nt | TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | Hammerhead_HH10.1-201 | ENST00000620658 | 125 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC138305.3-201 | ENST00000624988 | 240 nt | BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | THOC1-221 | ENST00000631280 | 2011 nt | TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | CNTN5-212 | ENST00000619298 | 5734 nt | TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | STON1-GTF2A1L-203 | ENST00000402114 | 3790 nt | TSL 2 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | INPP4B-215 | ENST00000509777 | 4334 nt | TSL 5 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | UEVLD-208 | ENST00000535484 | 1963 nt | TSL 2 BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | TFPI-201 | ENST00000233156 | 3885 nt | APPRIS P1 TSL 1 (best) BASIC | 4.42 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SGIP1-204 | ENST00000371039 | 4080 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL365440.1-201 | ENST00000436135 | 2167 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC007390.2-201 | ENST00000606229 | 3803 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | EIF2A-201 | ENST00000273435 | 2083 nt | APPRIS ALT1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | VEZT-201 | ENST00000261219 | 3435 nt | TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | N4BP2L2-202 | ENST00000357505 | 2917 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RNY1P14-201 | ENST00000384426 | 108 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | Y_RNA.534-201 | ENST00000384599 | 112 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNORD96B-201 | ENST00000386148 | 79 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNORA48.7-201 | ENST00000391302 | 135 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC012506.4-201 | ENST00000421563 | 541 nt | TSL 4 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | USMG5P1-201 | ENST00000425964 | 177 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | USP9YP30-201 | ENST00000430729 | 455 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC004875.1-201 | ENST00000432702 | 378 nt | TSL 3 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL691497.1-201 | ENST00000443270 | 449 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | LINC01594-201 | ENST00000445083 | 611 nt | TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | GHRL-209 | ENST00000446937 | 217 nt | TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL360271.2-201 | ENST00000447710 | 161 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RPL12P25-201 | ENST00000455592 | 494 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNORD5.1-201 | ENST00000458800 | 75 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SNORD108-201 | ENST00000459332 | 71 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | LINC01210-201 | ENST00000465283 | 625 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | HSPE1P6-201 | ENST00000479457 | 291 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RPL21P129-201 | ENST00000491732 | 478 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL159163.1-201 | ENST00000507747 | 600 nt | APPRIS P1 TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC092436.3-201 | ENST00000511788 | 257 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RNU6-927P-201 | ENST00000516199 | 100 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | PKIA-203 | ENST00000518467 | 588 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | IGHVIII-2-1-201 | ENST00000518843 | 291 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC127894.1-201 | ENST00000548266 | 851 nt | TSL 3 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | LINC02277-201 | ENST00000553386 | 453 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | MIR548AC-201 | ENST00000585049 | 88 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC010649.1-203 | ENST00000592230 | 454 nt | TSL 2 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | ESRRAP2-204 | ENST00000606337 | 280 nt | TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC006157.1-201 | ENST00000611750 | 366 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC244196.2-201 | ENST00000621184 | 411 nt | APPRIS P1 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL672167.1-203 | ENST00000641299 | 2975 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | SCN1A-220 | ENST00000641603 | 12506 nt | BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | HIPK3-204 | ENST00000525975 | 3668 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | FMO2-201 | ENST00000209929 | 3851 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | HERC4-204 | ENST00000395198 | 4445 nt | APPRIS ALT1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AP5M1-201 | ENST00000261558 | 11737 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AC004803.1-201 | ENST00000503602 | 3207 nt | TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | ATF7IP2-202 | ENST00000356427 | 3463 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | KCNJ13-201 | ENST00000233826 | 2950 nt | APPRIS P1 TSL 1 (best) BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | ADGRL2-205 | ENST00000370717 | 5873 nt | APPRIS ALT2 TSL 5 BASIC | 4.41 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | ZFHX4-207 | ENST00000521891 | 14019 nt | APPRIS P2 TSL 5 BASIC | 4.4 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | CDK14-201 | ENST00000265741 | 4953 nt | TSL 1 (best) BASIC | 4.4 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | RPS6KA6-204 | ENST00000620340 | 8169 nt | TSL 5 BASIC | 4.4 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | LINC01021-204 | ENST00000512067 | 1610 nt | TSL 1 (best) BASIC | 4.4 | □□□□□ -1.7 | | |
| BACE2 | Q9Y5Z0 | AL161668.1-201 | ENST00000320322 | 358 nt | TSL 1 (best) BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | RNU5A-1-201 | ENST00000362698 | 116 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MIR578-201 | ENST00000384828 | 96 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MIR548F4-201 | ENST00000408515 | 105 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | RNU4-6P-201 | ENST00000410804 | 122 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AC083867.1-201 | ENST00000413567 | 457 nt | TSL 3 BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MAP1LC3BP1-201 | ENST00000417653 | 379 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | UBE2V1P4-201 | ENST00000425374 | 344 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MTCO1P39-201 | ENST00000426148 | 480 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MTND3P25-201 | ENST00000509243 | 135 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | RNU6-470P-201 | ENST00000515954 | 104 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | RNU6-764P-201 | ENST00000516396 | 105 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | SCARNA16.2-201 | ENST00000516520 | 172 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AC069113.1-201 | ENST00000517763 | 267 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | COX6CP5-201 | ENST00000527162 | 228 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | CNTN5-209 | ENST00000528682 | 3800 nt | APPRIS P4 TSL 5 BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AC011494.1-201 | ENST00000596454 | 237 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | ELOCP5-201 | ENST00000604924 | 333 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AC034102.8-201 | ENST00000615146 | 484 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AC087588.2-201 | ENST00000617667 | 426 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | HOXA11-AS1_4.1-201 | ENST00000620901 | 233 nt | BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | AL136537.2-201 | ENST00000562049 | 2471 nt | TSL 1 (best) BASIC | 4.4 | □□□□□ -1.71 | | |
| BACE2 | Q9Y5Z0 | MLH3-212 | ENST00000556740 | 4491 nt | APPRIS P1 TSL 1 (best) BASIC | 4.4 | □□□□□ -1.71 | | |