Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 FCF1P1-201ENST00000432690 571 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RPS20P5-201ENST00000434808 360 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 MTND6P13-201ENST00000443510 523 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AP000936.2-201ENST00000447151 681 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 SNRPFP4-201ENST00000456366 242 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RPS20P22-201ENST00000473700 357 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 RAP1BP2-201ENST00000478270 544 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 MTND1P3-201ENST00000484956 952 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC093534.1-201ENST00000504977 132 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC117532.1-201ENST00000514638 323 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 Y_RNA.695-201ENST00000516715 107 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC007536.1-201ENST00000533382 349 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 ARL2BPP2-201ENST00000550907 489 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC074052.2-201ENST00000562516 214 ntTSL 3 BASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC106782.4-201ENST00000568264 210 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC008277.2-201ENST00000605196 797 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC004852.3-201ENST00000614131 326 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 AC110079.1-202ENST00000635213 138 ntBASIC3.09□□□□□ -1.91
CPSF3Q9UKF6 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 TEX43-201ENST00000357147 464 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 RNU6-270P-201ENST00000364131 105 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 RPS3AP3-201ENST00000411933 242 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AL365496.1-201ENST00000426885 215 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC093151.1-201ENST00000427711 313 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AL512844.2-201ENST00000433990 593 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 BNIP3P2-201ENST00000441221 577 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 ST13P20-201ENST00000447996 1065 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC009961.3-201ENST00000449832 765 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC096576.1-201ENST00000489014 359 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 RNA5SP367-201ENST00000516557 118 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC002545.1-201ENST00000592511 181 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC020895.1-201ENST00000595362 272 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC078899.3-201ENST00000599065 212 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AL137843.1-201ENST00000605078 385 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AL136363.1-201ENST00000605349 337 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AL451064.1-201ENST00000607718 471 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC090115.4-201ENST00000609970 188 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 UBE2Q2P6-201ENST00000612666 153 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 AC138915.1-201ENST00000565427 1685 ntBASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
CPSF3Q9UKF6 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNU5E-1-201ENST00000362477 120 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 Y_RNA.77-201ENST00000362962 107 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNU6-741P-201ENST00000383889 107 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 MIR512-1-201ENST00000384913 84 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 SNORA40.3-201ENST00000390964 122 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 MIR887-201ENST00000401258 79 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AL139397.2-201ENST00000404529 772 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNU2-36P-201ENST00000410361 191 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNU2-62P-201ENST00000410868 191 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC007283.2-201ENST00000424739 197 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC007919.1-201ENST00000429380 217 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 snoU13.28-201ENST00000459235 104 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RBM43P1-201ENST00000476891 1081 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 KC877373.1-201ENST00000479066 408 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AP004217.1-201ENST00000480579 346 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC010587.1-201ENST00000505809 469 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RAC1P5-201ENST00000512182 576 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 MTND5P13-201ENST00000513046 1079 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 Y_RNA.672-201ENST00000516289 104 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNA5SP337-201ENST00000517007 109 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RNU2-46P-201ENST00000517038 113 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 RN7SKP258-201ENST00000517151 304 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AF279873.4-202ENST00000521714 511 ntTSL 2 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 TRAV28-201ENST00000557548 323 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC135507.1-201ENST00000607214 561 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC131902.3-201ENST00000611767 581 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 AC008250.2-201ENST00000615261 205 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 MTND1P37-201ENST00000636562 264 ntBASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.07□□□□□ -1.92
CPSF3Q9UKF6 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 190.2 ms