Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 GNG5P1-201ENST00000255500 204 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC073325.2-201ENST00000339545 159 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 RNU6-486P-201ENST00000363116 107 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 U3.6-201ENST00000363622 211 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 RNU6-748P-201ENST00000384648 107 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 MIR128-1-201ENST00000384921 82 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 NDUFB4P4-201ENST00000404822 243 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 MIR1302-8-201ENST00000408342 128 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 MTND1P20-201ENST00000430341 950 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 MTCYBP39-201ENST00000437562 491 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 RN7SL20P-201ENST00000488827 297 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 SNORA3.4-201ENST00000515969 96 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 AC010149.2-201ENST00000637608 315 ntBASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CHMP4AQ9BY43 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 Z82209.1-201ENST00000422141 2135 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AL359854.1-201ENST00000614203 1594 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC092104.1-201ENST00000497346 1441 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MIR148B-201ENST00000362252 99 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 RNU5A-2P-201ENST00000384337 116 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 RNU6-19P-201ENST00000384718 107 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MIR147B-201ENST00000390185 80 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 ERMN-204ENST00000409925 556 ntTSL 4 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC137499.1-201ENST00000427602 88 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 ST13P20-201ENST00000447996 1065 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 RN7SL633P-201ENST00000488974 297 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 RN7SKP43-201ENST00000516173 320 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AP003718.1-201ENST00000529884 583 ntTSL 4 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MIR4446-201ENST00000578505 67 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MIR3167-201ENST00000579623 85 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AL451007.1-201ENST00000595491 289 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AL358072.1-201ENST00000604156 575 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC018714.1-201ENST00000605028 208 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC107214.2-201ENST00000608204 634 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 CU459211.1-201ENST00000635667 749 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MIR203B-201ENST00000636080 86 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC006927.3-201ENST00000638789 384 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 AC008264.2-201ENST00000610193 3731 ntBASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
CHMP4AQ9BY43 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 RNY3P13-201ENST00000365542 102 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 SNORA44-201ENST00000384584 132 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 SNORD115.1-201ENST00000391109 76 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AL139397.2-201ENST00000404529 772 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 U6atac.2-201ENST00000408644 118 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 ACTR3BP6-201ENST00000422332 1241 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 MTCO3P30-201ENST00000426425 670 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 RPS20P5-201ENST00000434808 360 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 MTCO1P42-201ENST00000457379 726 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AC117522.3-201ENST00000507974 584 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AC068657.1-201ENST00000520807 306 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 MIR4782-201ENST00000577987 79 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AC069294.1-201ENST00000608397 350 ntBASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.81□□□□□ -1.8
CHMP4AQ9BY43 MTND4P35-201ENST00000604257 1375 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU6-7-201ENST00000364784 107 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU6-8-201ENST00000365467 107 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU6-701P-201ENST00000384059 107 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 SNORA46-201ENST00000384762 135 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 EIF4EBP2P3-201ENST00000403144 334 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 RNU6-920P-201ENST00000410926 92 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 MTND4P25-201ENST00000441039 533 ntBASIC3.8□□□□□ -1.8
CHMP4AQ9BY43 AC146507.2-201ENST00000460608 476 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms