Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RNU6-874P-201ENST00000362390 105 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RN7SKP95-201ENST00000362860 303 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 U8.4-201ENST00000363626 134 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RNU6-708P-201ENST00000384217 107 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SNORA70-201ENST00000384436 135 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RNU6-1222P-201ENST00000384615 107 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SAR1AP2-201ENST00000392696 594 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 HMGN2P27-201ENST00000427352 270 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RPL35AP21-201ENST00000437667 333 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AL450023.3-201ENST00000440592 271 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RN7SKP210-201ENST00000459176 261 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RPS17P2-201ENST00000461663 408 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SNRPGP7-201ENST00000469016 106 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RPL30P10-201ENST00000488148 337 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RPS27AP10-201ENST00000496103 208 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 COX6B1P5-201ENST00000509843 249 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RNY3P15-201ENST00000516297 97 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 RNA5SP43-201ENST00000516559 110 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 MRPS36P4-201ENST00000534436 298 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AC044860.2-201ENST00000561005 179 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AC006077.1-201ENST00000604746 343 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AC064801.1-201ENST00000612025 407 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AC073308.1-201ENST00000623696 305 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 AC022336.2-201ENST00000568966 2538 ntBASIC3.89□□□□□ -1.79
CCDC140Q96MF4 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC3.89□□□□□ -1.79
CCDC140Q96MF4 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 SNORD56.1-201ENST00000362913 68 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.188-201ENST00000363952 111 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RNU6-1280P-201ENST00000365211 107 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.592-201ENST00000410274 109 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RNU2-37P-201ENST00000410695 177 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.618-201ENST00000410949 107 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RN7SKP53-201ENST00000411337 315 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RAB9AP3-201ENST00000412737 573 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 FAR2P2-201ENST00000413041 594 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 MTCO3P19-201ENST00000415864 321 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 CBX3P6-201ENST00000430257 527 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RAB9AP1-201ENST00000449393 573 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 COX6B1P2-201ENST00000489624 230 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC093852.1-201ENST00000503587 266 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 FTH1P9-201ENST00000513251 355 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RNU7-175P-201ENST00000515915 61 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 MYL12BP1-201ENST00000569826 507 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 MIR4691-201ENST00000583764 85 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC006116.3-201ENST00000592968 361 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AC018445.2-201ENST00000622987 260 ntBASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RNF123-214ENST00000629802 207 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC140Q96MF4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AC104260.2-201ENST00000623551 3497 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.222-201ENST00000364264 102 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.358-201ENST00000365491 99 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.526-201ENST00000384572 110 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 Y_RNA.551-201ENST00000384661 102 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 RNU6-713P-201ENST00000384761 107 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
CCDC140Q96MF4 SNORA12.2-201ENST00000391040 156 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 RPL21P17-201ENST00000397467 475 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 RPS4XP3-201ENST00000398541 413 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 MIR190B-201ENST00000401119 79 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 FTH1P15-201ENST00000406984 280 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 AP000275.1-201ENST00000411943 390 ntBASIC3.87□□□□□ -1.79
CCDC140Q96MF4 NDUFS5P4-201ENST00000412983 318 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms