Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 HSPE1P3-201ENST00000559254 309 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 CYP4A43P-201ENST00000568156 121 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 LARP7P2-201ENST00000575306 125 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 MIR4790-201ENST00000577799 79 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 ATM-230ENST00000640388 578 ntTSL 5 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
CHFRQ96EP1 GABPAP-201ENST00000419271 1356 ntBASIC4.09□□□□□ -1.75
CHFRQ96EP1 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.09□□□□□ -1.76
CHFRQ96EP1 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.76
CHFRQ96EP1 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 RNU1-15P-201ENST00000353977 144 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 SNORD46.1-201ENST00000364139 104 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 RNU6-853P-201ENST00000364306 107 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 Y_RNA.252-201ENST00000364556 101 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 Y_RNA.463-201ENST00000384271 102 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 Y_RNA.496-201ENST00000384444 101 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 RNU6-1109P-201ENST00000391187 107 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 SOD2P1-201ENST00000396543 562 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 MTCO2P33-201ENST00000402100 465 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 MIR548M-201ENST00000408260 86 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 RNU2-36P-201ENST00000410361 191 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 SNORA57.3-201ENST00000411095 141 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 CRYBB2P1-203ENST00000415709 538 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 DPH3P2-201ENST00000422618 250 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC233981.1-201ENST00000423224 461 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 HLA-N-201ENST00000437516 135 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 PPIAP15-201ENST00000479662 484 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 VN1R104P-201ENST00000505115 1009 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC092436.1-201ENST00000506450 503 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 RNA5SP454-201ENST00000517231 127 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC026403.1-201ENST00000518938 295 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 AP000857.1-201ENST00000532151 543 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC091516.1-201ENST00000549191 703 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC012468.1-201ENST00000604888 430 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 MIR432-201ENST00000606207 94 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC100812.1-201ENST00000607622 580 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC012409.4-201ENST00000612923 249 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 AC130324.3-201ENST00000614165 542 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.08□□□□□ -1.76
CHFRQ96EP1 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
CHFRQ96EP1 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
CHFRQ96EP1 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.22-201ENST00000362492 102 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU6-552P-201ENST00000362869 119 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU6-1252P-201ENST00000363054 104 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 SNORD74.4-201ENST00000364129 80 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU6-99P-201ENST00000364721 107 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.333-201ENST00000365274 102 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.378-201ENST00000365652 113 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.396-201ENST00000383949 103 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.482-201ENST00000384377 111 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.552-201ENST00000384665 112 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 SNORA11.1-201ENST00000408133 129 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU2-21P-201ENST00000410368 188 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 OR4K11P-201ENST00000431829 904 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RPS20P5-201ENST00000434808 360 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RPL7P28-201ENST00000437739 740 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC020550.1-201ENST00000447385 163 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 PRSS3P4-201ENST00000453323 162 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RPL22P13-201ENST00000493291 347 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC015911.1-201ENST00000495111 156 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC026726.1-201ENST00000512859 601 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU1-95P-201ENST00000516357 160 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 RNU1-128P-201ENST00000516704 160 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 Y_RNA.721-201ENST00000517207 102 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 CYCSP30-201ENST00000546447 172 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 OR4K8P-201ENST00000578842 1048 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 MIR3944-201ENST00000581277 108 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC4.07□□□□□ -1.76
CHFRQ96EP1 AL121992.2-201ENST00000606262 256 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AC006157.1-201ENST00000611750 366 ntBASIC4.07□□□□□ -1.76
CHFRQ96EP1 AL355810.1-201ENST00000614629 552 ntBASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 121.4 ms