Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 RNA5SP456-201ENST00000364002 114 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 RNU1-112P-201ENST00000364401 164 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 RNU6-741P-201ENST00000383889 107 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 U8.14-201ENST00000390843 143 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC023141.4-201ENST00000412031 328 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AL356867.1-201ENST00000429623 299 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 GTF2IP20-201ENST00000431663 360 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 FCF1P1-201ENST00000432690 571 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 RPL35AP22-201ENST00000436855 335 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 snoU13.22-201ENST00000459428 104 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC011825.1-201ENST00000484967 388 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 MRPL42P6-201ENST00000486397 371 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 SUMO2P6-201ENST00000505273 288 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC034234.1-202ENST00000508696 339 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC002456.2-201ENST00000509356 380 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 RNU6-1003P-201ENST00000517099 105 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC107934.1-201ENST00000522215 217 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 ZNF519P3-201ENST00000557158 1032 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC091489.2-201ENST00000566263 604 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AL356432.3-201ENST00000568952 465 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 MIR3117-201ENST00000584034 78 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 MIR4658-201ENST00000584344 65 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 CR848007.1-201ENST00000442354 1699 ntBASIC2.22□□□□□ -2.05
CCDC54Q8NEL0 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.21□□□□□ -2.05
CCDC54Q8NEL0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 RNU6-859P-201ENST00000362728 107 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 MIR23B-201ENST00000384832 97 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 MIR524-201ENST00000385242 87 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 MIR767-201ENST00000390228 109 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 RPL23AP39-201ENST00000415533 405 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 USP9YP13-201ENST00000417797 480 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 SKA2P1-201ENST00000425592 390 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 TIMM9P1-201ENST00000436122 256 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC105272.1-201ENST00000438604 198 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ELOCP30-201ENST00000447108 299 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC072039.1-201ENST00000477611 581 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC090096.1-201ENST00000489168 390 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 SNORA31.3-201ENST00000516029 96 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ATP5F1P5-201ENST00000526403 760 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 COX6CP5-201ENST00000527162 228 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC243972.3-201ENST00000539655 198 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 LRRC34P1-201ENST00000542742 915 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 GLYCAM1-201ENST00000546596 285 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC135628.1-201ENST00000568867 534 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 CLPTM1LP1-201ENST00000604519 484 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 MTND4LP5-201ENST00000605152 292 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 FTX_3.1-201ENST00000610451 147 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 C4orf22-209ENST00000621014 228 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 AC004777.1-201ENST00000624317 287 ntBASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 OR4M1-202ENST00000641200 3493 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
CCDC54Q8NEL0 ZNF833P-201ENST00000424938 1494 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 NF1-214ENST00000490416 1329 ntTSL 3 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 Y_RNA.18-201ENST00000362461 102 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 RNU5F-6P-201ENST00000362979 116 ntBASIC2.2□□□□□ -2.06
CCDC54Q8NEL0 RNU6-809P-201ENST00000384461 107 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms