Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC0.82□□□□□ -2.28
USF3Q68DE3 AC022447.3-201ENST00000506865 495 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 RNA5SP471-201ENST00000516971 106 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 AC004923.2-201ENST00000529649 369 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 SMILR-201ENST00000533992 553 ntTSL 4 BASIC0.82□□□□□ -2.28
USF3Q68DE3 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
USF3Q68DE3 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC0.82□□□□□ -2.28
USF3Q68DE3 AC112191.3-201ENST00000604371 277 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 AL050343.2-201ENST00000607338 280 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC0.82□□□□□ -2.28
USF3Q68DE3 AL360181.4-201ENST00000621752 134 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 AC095031.1-201ENST00000623685 672 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC0.82□□□□□ -2.28
USF3Q68DE3 SUCLA2P2-201ENST00000417269 1309 ntBASIC0.82□□□□□ -2.28
USF3Q68DE3 RNA5SP125-201ENST00000364843 120 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 RNU6-198P-201ENST00000384258 104 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 OR6C66P-201ENST00000414917 930 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 AC005534.2-201ENST00000431047 433 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 MICF-203ENST00000432679 129 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC015922.2-201ENST00000435593 184 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 RPS15AP34-201ENST00000487776 387 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.81□□□□□ -2.28
USF3Q68DE3 AP001960.1-201ENST00000506494 658 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 NDUFB4P2-201ENST00000509515 391 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 CBX3P8-201ENST00000532412 525 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 CBX3P7-201ENST00000532876 502 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AL160236.1-201ENST00000556317 195 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 ZNF92P3-201ENST00000596594 954 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AL096840.1-201ENST00000603287 93 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 HSPE1P7-201ENST00000604681 321 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AL009028.1-201ENST00000604895 802 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
USF3Q68DE3 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC0.81□□□□□ -2.28
USF3Q68DE3 RNU6-173P-201ENST00000364215 104 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
USF3Q68DE3 RNU6-882P-201ENST00000391025 103 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 RNA5SP450-201ENST00000411206 102 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.81□□□□□ -2.28
USF3Q68DE3 RPL21P90-201ENST00000415692 466 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.81□□□□□ -2.28
USF3Q68DE3 YWHAZP8-201ENST00000436935 731 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 MTND2P19-201ENST00000449129 1012 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC107626.1-201ENST00000471084 183 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 MRPS33P3-201ENST00000513456 322 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 SNORA31.25-201ENST00000517242 134 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 MTND2P26-201ENST00000528255 1029 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 MIR4287-201ENST00000579398 78 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.81□□□□□ -2.28
USF3Q68DE3 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC0.81□□□□□ -2.28
USF3Q68DE3 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC0.81□□□□□ -2.28
USF3Q68DE3 TEX21P-201ENST00000447107 1476 ntBASIC0.81□□□□□ -2.28
USF3Q68DE3 CR848007.1-201ENST00000442354 1699 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 CBX3P1-201ENST00000325243 554 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 MIR193B-201ENST00000384907 83 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC0.8□□□□□ -2.28
USF3Q68DE3 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC0.8□□□□□ -2.28
USF3Q68DE3 AC004383.1-201ENST00000438135 289 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 snoU13.28-201ENST00000459235 104 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 RNF138P1-201ENST00000502765 546 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC0.8□□□□□ -2.28
USF3Q68DE3 AC078899.2-201ENST00000595282 212 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC027309.3-201ENST00000623419 351 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC097372.4-201ENST00000625025 466 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC0.8□□□□□ -2.28
USF3Q68DE3 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
USF3Q68DE3 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC0.8□□□□□ -2.28
USF3Q68DE3 SNORA68.1-201ENST00000364537 132 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC0.8□□□□□ -2.28
USF3Q68DE3 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
USF3Q68DE3 U3.29-201ENST00000391296 212 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC0.8□□□□□ -2.28
USF3Q68DE3 AL512604.1-201ENST00000404812 257 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC004941.2-201ENST00000427009 228 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC0.8□□□□□ -2.28
USF3Q68DE3 HMGN1P33-201ENST00000432945 451 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AL691517.1-201ENST00000440833 1235 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC0.8□□□□□ -2.28
USF3Q68DE3 PRELID3BP4-201ENST00000515476 571 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC0.8□□□□□ -2.28
USF3Q68DE3 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC0.8□□□□□ -2.28
USF3Q68DE3 AC092470.1-201ENST00000546187 132 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC090666.1-201ENST00000578241 445 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 MTCO2P22-201ENST00000603246 681 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC079395.3-201ENST00000615161 484 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 AC109809.1-201ENST00000619665 545 ntBASIC0.8□□□□□ -2.28
USF3Q68DE3 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.8□□□□□ -2.28
USF3Q68DE3 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC0.79□□□□□ -2.28
USF3Q68DE3 SNORA38-201ENST00000363946 132 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 RNU6-244P-201ENST00000391028 104 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AL591704.2-201ENST00000421658 181 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AL591212.2-201ENST00000433923 257 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AL583843.1-201ENST00000456070 346 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC117503.1-201ENST00000472241 394 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 RNU6-970P-201ENST00000516312 107 ntBASIC0.79□□□□□ -2.28
USF3Q68DE3 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms