Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 RNA5SP164-201ENST00000516533 110 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 RN7SKP256-201ENST00000517201 314 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC087241.2-201ENST00000535801 324 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 DPPA3P3-201ENST00000603842 430 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AL670379.4-201ENST00000605279 254 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 SNORA62.6-201ENST00000606322 83 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC069234.5-201ENST00000611056 416 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC009248.2-201ENST00000619826 254 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AL136221.1-201ENST00000621449 509 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC121333.1-201ENST00000567488 2709 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 AC006504.1-201ENST00000562493 3666 ntBASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.68□□□□□ -1.82
PTCHD3Q3KNS1 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.11-201ENST00000362375 109 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 U8.11-201ENST00000384699 133 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 U8.12-201ENST00000384701 133 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 UBE2V1P2-201ENST00000397758 440 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 HSPE1P8-201ENST00000406997 288 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 SNORA3.3-201ENST00000408712 125 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 MIR1183-201ENST00000408856 89 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 RAB9AP3-201ENST00000412737 573 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AL591212.2-201ENST00000433923 257 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 VDAC1P3-201ENST00000434069 851 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 IFNA20P-201ENST00000436840 528 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC104058.1-201ENST00000448028 297 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 RAB9AP1-201ENST00000449393 573 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 U8.18-201ENST00000459285 133 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-1208P-201ENST00000459588 107 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC091153.1-201ENST00000466297 402 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AL049874.1-201ENST00000489560 388 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.654-201ENST00000497848 106 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 FAM206BP-201ENST00000510179 541 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 PANCR-202ENST00000513690 448 ntTSL 2 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 SCARNA14-201ENST00000516903 136 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 ATP5F1P5-201ENST00000526403 760 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC243972.3-201ENST00000539655 198 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC022893.3-201ENST00000607665 437 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC009570.1-201ENST00000609599 745 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC093913.1-201ENST00000614178 329 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AC009233.1-201ENST00000616477 371 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AL359314.1-201ENST00000616913 261 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PTCHD3Q3KNS1 AP001486.2-201ENST00000561652 5113 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MIR423-201ENST00000362201 94 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.61-201ENST00000362835 102 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 SNORA73.2-201ENST00000364946 201 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.399-201ENST00000383955 105 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-116P-201ENST00000384042 109 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 RNU6-1127P-201ENST00000384580 107 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AL451062.2-201ENST00000427515 271 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 SCARNA18-201ENST00000459004 134 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 RPS20P22-201ENST00000473700 357 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 FGF7P4-201ENST00000509595 295 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC104136.1-201ENST00000512969 394 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 Y_RNA.665-201ENST00000516177 98 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 SNORA70.16-201ENST00000516390 95 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 RN7SKP209-201ENST00000516888 304 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 NARSP2-201ENST00000518524 679 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC022690.1-201ENST00000526681 550 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MTCO3P23-201ENST00000561363 289 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MIR4644-201ENST00000579929 84 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MIR4444-1-201ENST00000581696 74 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 MIR4444-2-201ENST00000584390 74 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AL158032.1-201ENST00000605401 106 ntBASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC3.66□□□□□ -1.82
PTCHD3Q3KNS1 AC006023.2-201ENST00000609916 167 ntBASIC3.66□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms