Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC0.58□□□□□ -2.32
COL7A1Q02388 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC0.57□□□□□ -2.32
COL7A1Q02388 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
COL7A1Q02388 SPAG11A-202ENST00000326625 445 ntTSL 5 BASIC0.57□□□□□ -2.32
COL7A1Q02388 RNU6-173P-201ENST00000364215 104 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.57□□□□□ -2.32
COL7A1Q02388 RNU6-39P-201ENST00000384344 107 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 CCNB2P1-201ENST00000399411 1150 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC0.57□□□□□ -2.32
COL7A1Q02388 HMGN2P30-201ENST00000423237 256 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC012497.1-201ENST00000429392 575 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
COL7A1Q02388 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.57□□□□□ -2.32
COL7A1Q02388 AL500527.1-201ENST00000448532 255 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 RPS20P20-201ENST00000460498 340 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 HMGN1P10-201ENST00000474557 553 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 LINC01088-203ENST00000507476 785 ntTSL 3 BASIC0.57□□□□□ -2.32
COL7A1Q02388 AC121161.1-201ENST00000510606 652 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 OR5H4P-201ENST00000510851 923 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC060765.1-201ENST00000522776 544 ntTSL 4 BASIC0.57□□□□□ -2.32
COL7A1Q02388 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC0.57□□□□□ -2.32
COL7A1Q02388 AC135178.6-201ENST00000605314 398 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC006065.5-201ENST00000623427 349 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC110079.1-202ENST00000635213 138 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 RNU4-42P-201ENST00000364738 142 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 RNU2-71P-201ENST00000411395 189 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AL158823.1-201ENST00000418441 478 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 SNRPEP4-201ENST00000435815 279 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 HMGN2P21-201ENST00000447764 270 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC010627.1-201ENST00000503819 1294 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 RNU1-61P-201ENST00000516107 151 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC0.57□□□□□ -2.32
COL7A1Q02388 MTND4LP24-201ENST00000572277 291 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 AC013244.2-201ENST00000603396 103 ntBASIC0.57□□□□□ -2.32
COL7A1Q02388 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
COL7A1Q02388 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC0.57□□□□□ -2.32
COL7A1Q02388 MTND5P11-201ENST00000511037 1812 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 Y_RNA.25-201ENST00000362528 102 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 SNORA7.2-201ENST00000364446 145 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 CISD1P1-201ENST00000393907 327 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AC068050.1-201ENST00000394891 380 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AL161788.1-201ENST00000441805 169 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC0.56□□□□□ -2.32
COL7A1Q02388 HSPE1P24-201ENST00000450782 238 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.56□□□□□ -2.32
COL7A1Q02388 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC0.56□□□□□ -2.32
COL7A1Q02388 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC0.56□□□□□ -2.32
COL7A1Q02388 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.56□□□□□ -2.32
COL7A1Q02388 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.56□□□□□ -2.32
COL7A1Q02388 AL356867.1-201ENST00000429623 299 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC0.56□□□□□ -2.32
COL7A1Q02388 MTND6P13-201ENST00000443510 523 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 BLNK-209ENST00000495266 440 ntTSL 5 BASIC0.56□□□□□ -2.32
COL7A1Q02388 RNU6-229P-201ENST00000516614 102 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AC026904.2-201ENST00000521359 537 ntTSL 3 BASIC0.56□□□□□ -2.32
COL7A1Q02388 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC0.56□□□□□ -2.32
COL7A1Q02388 MIR4698-201ENST00000577795 80 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 AC012213.4-201ENST00000606457 354 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
COL7A1Q02388 CCT4P2-201ENST00000233836 1548 ntBASIC0.56□□□□□ -2.32
COL7A1Q02388 RNA5SP347-201ENST00000362445 119 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 Y_RNA.559-201ENST00000384686 107 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RPL23AP32-201ENST00000395315 459 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RPL31P52-201ENST00000407532 367 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RNU2-70P-201ENST00000410718 179 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RNU2-41P-201ENST00000410991 178 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 SSXP4-201ENST00000451349 245 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 SNORD97-201ENST00000459187 142 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RNU7-157P-201ENST00000459600 66 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RNU6-758P-201ENST00000516292 89 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC008269.2-201ENST00000561915 1105 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 MIR3690-201ENST00000580266 75 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 uc_338.14-201ENST00000613162 166 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
COL7A1Q02388 RNA5SP276-201ENST00000362580 94 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 SNORD114-2-201ENST00000363953 78 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC0.55□□□□□ -2.32
COL7A1Q02388 SNORA51.10-201ENST00000384418 136 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AL353706.1-201ENST00000436728 494 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 PMCHL2-203ENST00000457791 237 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC010285.1-201ENST00000470580 392 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC026801.1-201ENST00000497178 464 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AC025768.1-201ENST00000510057 267 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 RNU6-351P-201ENST00000516097 100 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 SNORA48.11-201ENST00000517015 89 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AC087465.1-201ENST00000560574 245 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 MTND2P13-201ENST00000577438 1039 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AL078605.1-201ENST00000603529 500 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 MIR6076-201ENST00000617521 113 ntBASIC0.55□□□□□ -2.32
COL7A1Q02388 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC0.55□□□□□ -2.32
COL7A1Q02388 AC067863.3-201ENST00000624172 122 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 117.6 ms